BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033302
         (571 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containi...   267   8e-70
emb|CBI19955.3| unnamed protein product [Vitis vinifera]              267   8e-70
ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [S...   213   2e-53
gb|AER41645.1| CRR4 [Oryza punctata]                                  211   5e-53
gb|AER41579.1| CRR4 [Oryza brachyantha]                               211   9e-53

>ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  267 bits (683), Expect = 8e-70
 Identities = 127/187 (67%), Positives = 154/187 (82%)
 Frame = +3

Query: 9   GELNSPNKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLVSV 188
           G+L S   +F  MP+KNVV+WNAMI+GYV N+ FD+AL +FH ML NGEC P++ TL+S+
Sbjct: 248 GDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISI 307

Query: 189 LSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCI 368
           LSAC  LG+LE GKWI+SY+KKN  +LS  LGNALIDMFAKCGD+E A EVFH ++ RCI
Sbjct: 308 LSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCI 367

Query: 369 ITWTTMVSGLALNGKFREALSLFDTMCRERIEPDYVIFTAVLSACSHGGLVEEGQRVFKQ 548
           ITWTTMVSGLA+NGK REA++LFD MC E  +PD VIF AVLSAC+HGGLVEEG+RVF Q
Sbjct: 368 ITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQ 427

Query: 549 MVMQFGV 569
           MV +FG+
Sbjct: 428 MVQEFGI 434



 Score = 79.7 bits (195), Expect = 3e-13
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
 Frame = +3

Query: 9   GELNSPNKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLVSV 188
           GE+ S   L   MP +N+VTWN+++ G  +    + A S+F +M        NE +  S+
Sbjct: 155 GEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLR-----NEVSWNSM 209

Query: 189 LSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCI 368
           +S   R+G +   + I   M +     + V   A+I  +A  GD++ A  +F+ +  + +
Sbjct: 210 ISGYVRIGDVRAAQSIFYQMPEK----TVVSWTAMISGYATNGDLKSAENIFNHMPVKNV 265

Query: 369 ITWTTMVSGLALNGKFREALSLFDTM-CRERIEPDYVIFTAVLSACSHGGLVEEGQ 533
           ++W  M+SG   N +F +AL +F  M       PD     ++LSAC+H G +E G+
Sbjct: 266 VSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGK 321



 Score = 58.2 bits (139), Expect = 9e-07
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
 Frame = +3

Query: 165 NEATLVSVLSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGD-IEFAIEV 341
           N  T   +L       ALE G+ I   + K G+  S  + N+L+  +A C + +  A  V
Sbjct: 73  NSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRV 132

Query: 342 FHCVTDRCIITWTTMVSGLALNGKFREALSLFDTMCRERIEPDYVIFTAVLSACSHGGLV 521
           F  + +R +I+W +M+S     G+ + A+ L D M    I    V + +V+   S  G +
Sbjct: 133 FEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI----VTWNSVVCGLSKAGNM 188

Query: 522 EEGQRVFKQMVMQ 560
           E    VF+QM ++
Sbjct: 189 ELAHSVFEQMPLR 201


>emb|CBI19955.3| unnamed protein product [Vitis vinifera]
          Length = 488

 Score =  267 bits (683), Expect = 8e-70
 Identities = 127/187 (67%), Positives = 154/187 (82%)
 Frame = +3

Query: 9   GELNSPNKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLVSV 188
           G+L S   +F  MP+KNVV+WNAMI+GYV N+ FD+AL +FH ML NGEC P++ TL+S+
Sbjct: 184 GDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISI 243

Query: 189 LSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCI 368
           LSAC  LG+LE GKWI+SY+KKN  +LS  LGNALIDMFAKCGD+E A EVFH ++ RCI
Sbjct: 244 LSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCI 303

Query: 369 ITWTTMVSGLALNGKFREALSLFDTMCRERIEPDYVIFTAVLSACSHGGLVEEGQRVFKQ 548
           ITWTTMVSGLA+NGK REA++LFD MC E  +PD VIF AVLSAC+HGGLVEEG+RVF Q
Sbjct: 304 ITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQ 363

Query: 549 MVMQFGV 569
           MV +FG+
Sbjct: 364 MVQEFGI 370



 Score = 79.7 bits (195), Expect = 3e-13
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
 Frame = +3

Query: 9   GELNSPNKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLVSV 188
           GE+ S   L   MP +N+VTWN+++ G  +    + A S+F +M        NE +  S+
Sbjct: 91  GEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLR-----NEVSWNSM 145

Query: 189 LSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCI 368
           +S   R+G +   + I   M +     + V   A+I  +A  GD++ A  +F+ +  + +
Sbjct: 146 ISGYVRIGDVRAAQSIFYQMPEK----TVVSWTAMISGYATNGDLKSAENIFNHMPVKNV 201

Query: 369 ITWTTMVSGLALNGKFREALSLFDTM-CRERIEPDYVIFTAVLSACSHGGLVEEGQ 533
           ++W  M+SG   N +F +AL +F  M       PD     ++LSAC+H G +E G+
Sbjct: 202 VSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGK 257



 Score = 58.2 bits (139), Expect = 9e-07
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
 Frame = +3

Query: 165 NEATLVSVLSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGD-IEFAIEV 341
           N  T   +L       ALE G+ I   + K G+  S  + N+L+  +A C + +  A  V
Sbjct: 9   NSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRV 68

Query: 342 FHCVTDRCIITWTTMVSGLALNGKFREALSLFDTMCRERIEPDYVIFTAVLSACSHGGLV 521
           F  + +R +I+W +M+S     G+ + A+ L D M    I    V + +V+   S  G +
Sbjct: 69  FEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI----VTWNSVVCGLSKAGNM 124

Query: 522 EEGQRVFKQMVMQ 560
           E    VF+QM ++
Sbjct: 125 ELAHSVFEQMPLR 137


>ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
           gi|241925170|gb|EER98314.1| hypothetical protein
           SORBIDRAFT_02g008110 [Sorghum bicolor]
          Length = 601

 Score =  213 bits (542), Expect = 2e-53
 Identities = 101/189 (53%), Positives = 136/189 (71%)
 Frame = +3

Query: 3   KVGELNSPNKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLV 182
           K+G+L+S   LF  MP KN+V+WNAMI GY  N+ +DEAL  F +M+  G   P+EATLV
Sbjct: 286 KIGDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTFQQMMLEGRFMPDEATLV 345

Query: 183 SVLSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDR 362
           SV+SAC +LG++E   WI SY+ K+  +++  LGNALIDMFAKCGD+  A   F  +  R
Sbjct: 346 SVVSACAQLGSVEYCNWISSYISKSNTHITVALGNALIDMFAKCGDVGRARLAFDKMKTR 405

Query: 363 CIITWTTMVSGLALNGKFREALSLFDTMCRERIEPDYVIFTAVLSACSHGGLVEEGQRVF 542
           C+ITWTTM+SG A NG+FREAL ++  +CRE +  D  IF A L+AC+HGGL++EG  +F
Sbjct: 406 CVITWTTMISGFAYNGQFREALLIYSDICREGVTLDDTIFIAALAACAHGGLLQEGWSIF 465

Query: 543 KQMVMQFGV 569
           KQMV  +G+
Sbjct: 466 KQMVEHYGI 474



 Score = 72.0 bits (175), Expect = 6e-11
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 1/173 (0%)
 Frame = +3

Query: 9   GELNSPNKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLVSV 188
           G+     +LF  +P +NVV+WN ++A + +      A ++F  M      + N      +
Sbjct: 195 GDTTGAMELFEAIPERNVVSWNTIVAAFTRAGDMVSAHAVFDRMPIRDAISWN-----LM 249

Query: 189 LSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCI 368
           +S     G +E  + +   M +       V   A++  +AK GD++ A  +F  + D+ +
Sbjct: 250 ISGYAGSGNVESARTLFDLMDRKDV----VSWTAMVSAYAKIGDLDSARVLFDQMPDKNL 305

Query: 369 ITWTTMVSGLALNGKFREALSLFDTMCRE-RIEPDYVIFTAVLSACSHGGLVE 524
           ++W  M++G   N ++ EAL  F  M  E R  PD     +V+SAC+  G VE
Sbjct: 306 VSWNAMITGYNHNSRYDEALRTFQQMMLEGRFMPDEATLVSVVSACAQLGSVE 358


>gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  211 bits (538), Expect = 5e-53
 Identities = 99/189 (52%), Positives = 138/189 (73%)
 Frame = +3

Query: 3   KVGELNSPNKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLV 182
           K+G+L++  +LF  MP+KN+V+WNAMI GY  N+ +DEAL  F  M+  G   P+EATLV
Sbjct: 286 KIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLV 345

Query: 183 SVLSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDR 362
           SV+SAC +LG++E   WI S++ K+  +L+  LGNALIDMFAKCGD+  A  +F+ +  R
Sbjct: 346 SVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETR 405

Query: 363 CIITWTTMVSGLALNGKFREALSLFDTMCRERIEPDYVIFTAVLSACSHGGLVEEGQRVF 542
           CIITWTTM+SG A NG  REAL +++ MCRE +E D  +F A L+AC+HGGL++EG  +F
Sbjct: 406 CIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWSIF 465

Query: 543 KQMVMQFGV 569
            +MV Q+ +
Sbjct: 466 NEMVEQYNI 474



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 1/173 (0%)
 Frame = +3

Query: 9   GELNSPNKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLVSV 188
           G+      LF  MP +NVV+WN ++AG+ +      A ++F  M S    + N      +
Sbjct: 195 GDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMVTARTVFDRMPSRNAVSWN-----LM 249

Query: 189 LSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCI 368
           +S     G +E  + +   M +       V   A++  +AK GD++ A E+F  +  + +
Sbjct: 250 ISGYATSGDVEAARSVFDRMDQKDV----VSWTAMVSAYAKIGDLDTAKELFDHMPVKNL 305

Query: 369 ITWTTMVSGLALNGKFREALSLFDTMCRE-RIEPDYVIFTAVLSACSHGGLVE 524
           ++W  M++G   N ++ EAL  F  M  E R  PD     +V+SAC+  G VE
Sbjct: 306 VSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVE 358


>gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  211 bits (536), Expect = 9e-53
 Identities = 99/189 (52%), Positives = 138/189 (73%)
 Frame = +3

Query: 3   KVGELNSPNKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLV 182
           K+G+L++  +LF  MPLKN+V+WNAMI GY  N+ + EAL  F  M+  G   P+EATLV
Sbjct: 280 KIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLV 339

Query: 183 SVLSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDR 362
           SV+SAC +LG++E   WI S+++K+  +L+  LGNALIDMFAKCGD+  A  +F+ +  R
Sbjct: 340 SVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKTR 399

Query: 363 CIITWTTMVSGLALNGKFREALSLFDTMCRERIEPDYVIFTAVLSACSHGGLVEEGQRVF 542
           CIITWTTM+SG A NG  REAL +++ MCRE +E D ++F A L+AC HGGL++EG  +F
Sbjct: 400 CIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIF 459

Query: 543 KQMVMQFGV 569
            +MV Q+ +
Sbjct: 460 NEMVEQYNI 468



 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 1/173 (0%)
 Frame = +3

Query: 9   GELNSPNKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLVSV 188
           G+     +LF  MP +NVV+WN ++AG+ +      A ++F  M S    + N      +
Sbjct: 188 GDYTGAMELFEAMPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAISWN-----LM 242

Query: 189 LSACGRLGALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCI 368
           +S     G +E  +   S   +       V   A++  +AK GD++ A E+F  +  + +
Sbjct: 243 ISGYASSGDVEAAR---SMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNL 299

Query: 369 ITWTTMVSGLALNGKFREALSLFDTMCRE-RIEPDYVIFTAVLSACSHGGLVE 524
           ++W  M++G   N ++ EAL  F  M  E R  PD     +V+SAC+  G VE
Sbjct: 300 VSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVE 352