BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033296
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containi...   105   4e-21
ref|NP_178260.1| pentatricopeptide repeat-containing protein [Ar...    92   6e-17
ref|XP_002876755.1| pentatricopeptide repeat-containing protein ...    87   1e-15
ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containi...    62   6e-08
emb|CBI27814.3| unnamed protein product [Vitis vinifera]               59   3e-07

>ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
           gi|297737690|emb|CBI26891.3| unnamed protein product
           [Vitis vinifera]
          Length = 610

 Score =  105 bits (262), Expect = 4e-21
 Identities = 50/75 (66%), Positives = 63/75 (84%)
 Frame = -1

Query: 227 QTFSSLLKCHSSNPNQLKQIHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMH 48
           Q  ++LL+  SS+P+ LKQ+HALLLTTG+ +KN  IT+LLTSLTLLG M YARQLFDEMH
Sbjct: 37  QALTTLLQSCSSHPSLLKQLHALLLTTGLSIKNALITQLLTSLTLLGDMSYARQLFDEMH 96

Query: 47  KPRSYLWTTLIRGYV 3
           KPR +LW T+++GYV
Sbjct: 97  KPRPFLWNTIMKGYV 111


>ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
           gi|3785980|gb|AAC67327.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250369|gb|AEC05463.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 584

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 43/75 (57%), Positives = 55/75 (73%)
 Frame = -1

Query: 227 QTFSSLLKCHSSNPNQLKQIHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMH 48
           Q  S LL+  SS P QLK+IHA++L TG   KN  +T+LL +L ++G M YARQ+FDEMH
Sbjct: 11  QMLSELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMH 70

Query: 47  KPRSYLWTTLIRGYV 3
           KPR +LW TL +GYV
Sbjct: 71  KPRIFLWNTLFKGYV 85


>ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322593|gb|EFH53014.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 597

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 42/75 (56%), Positives = 54/75 (72%)
 Frame = -1

Query: 227 QTFSSLLKCHSSNPNQLKQIHALLLTTGIHVKNRHITKLLTSLTLLGAMHYARQLFDEMH 48
           Q  S LL+  SS P QLK+IHA+++ TG   KN  +T+LL +L L+G M YARQ+FDEM 
Sbjct: 11  QMLSELLRASSSKPKQLKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMP 70

Query: 47  KPRSYLWTTLIRGYV 3
           KPR +LW TL +GYV
Sbjct: 71  KPRIFLWNTLFKGYV 85


>ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
           gi|449470513|ref|XP_004152961.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
           gi|449523079|ref|XP_004168552.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
 Frame = -1

Query: 230 HQTFSSLLKCHSSNPNQLKQIHALLLTTGIHVKNRHITKLLTS--LTLLGAMHYARQLFD 57
           HQ  S++ KC SS   QLK++HA +L TG+       +KL T+  L+    + YAR LFD
Sbjct: 26  HQILSTIDKCSSSK--QLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFD 83

Query: 56  EMHKPRSYLWTTLIRGY 6
           ++ +P  Y W TLIR Y
Sbjct: 84  QIPQPNLYTWNTLIRAY 100


>emb|CBI27814.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = -1

Query: 227 QTFSSLLKCHSSNPNQLKQIHALLLTTGIHVKNRHITKLL-TSLTLLGAMHYARQLFDEM 51
           ++F+ LL C SS P+ L +IHAL++T G        TKL+ T+  L   M YAR++FD+M
Sbjct: 30  RSFNYLLNCCSSLPD-LSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQM 88

Query: 50  HKPRSYLWTTLIRGY 6
            K   +LW TLIRGY
Sbjct: 89  PKRDVFLWNTLIRGY 103