BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033295
         (737 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi...   310   3e-82
ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-lik...   300   3e-79
ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus ...   296   3e-78
ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycin...   291   1e-76
gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]      287   2e-75

>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
           gi|297739525|emb|CBI29707.3| unnamed protein product
           [Vitis vinifera]
          Length = 380

 Score =  310 bits (793), Expect = 3e-82
 Identities = 149/182 (81%), Positives = 163/182 (89%)
 Frame = +2

Query: 191 SKTEEEERGMQRYLFAVEYIGTRFSGSQKQTSNYRTVVGVLEEAFHKFIGRPVTVSCSSR 370
           SKT  +   +QRYL AVEYIGTRFSGSQ+Q  N RTV G L+EAFHKFIG+PV++ CSSR
Sbjct: 52  SKTMTQNPRVQRYLVAVEYIGTRFSGSQQQL-NCRTVAGALQEAFHKFIGQPVSIFCSSR 110

Query: 371 TDAGVHALCNVCHVDIERISKRKPGEVLPAHEPEVVRKAVNHFLLKNEGDVMVTDVRCVP 550
           TDAGVHAL NVCHVD+ERISKRKPGEVLP HEP VVR+AVNHFL KNEGDVMV DVRCVP
Sbjct: 111 TDAGVHALSNVCHVDVERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDVMVIDVRCVP 170

Query: 551 SDFHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPKDLDFLAMQKACRVLIGCHDFSS 730
            DFHAR+KA+ERTYFYRLLSGPEPLS+FEKDRAWHVP+DLD LAMQKACRVL+GCHDFSS
Sbjct: 171 PDFHARYKARERTYFYRLLSGPEPLSSFEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSS 230

Query: 731 FR 736
           FR
Sbjct: 231 FR 232


>ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
          Length = 369

 Score =  300 bits (767), Expect = 3e-79
 Identities = 152/203 (74%), Positives = 167/203 (82%), Gaps = 16/203 (7%)
 Frame = +2

Query: 176 KPVKISKTE--------EEERGM--------QRYLFAVEYIGTRFSGSQKQTSNYRTVVG 307
           +P KISK E        EEE GM        QRYL A+EYIGT FSGSQKQ  N RTVVG
Sbjct: 18  RPSKISKIEYPSDSDIDEEEEGMSQNPRNGIQRYLVAIEYIGTLFSGSQKQL-NVRTVVG 76

Query: 308 VLEEAFHKFIGRPVTVSCSSRTDAGVHALCNVCHVDIERISKRKPGEVLPAHEPEVVRKA 487
            LEEAF KF+G+PV+VSCSSRTDAGVHAL NVCHVDI+RISKR+PGEVLP HEP VV +A
Sbjct: 77  ALEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKRRPGEVLPPHEPAVVGRA 136

Query: 488 VNHFLLKNEGDVMVTDVRCVPSDFHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPKD 667
           VNHFL K++ D+MV DVRCVPSDFHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVP++
Sbjct: 137 VNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEE 196

Query: 668 LDFLAMQKACRVLIGCHDFSSFR 736
           L   AMQ+ACRVL+GCHDFSSFR
Sbjct: 197 LSLPAMQEACRVLVGCHDFSSFR 219


>ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis]
           gi|223534233|gb|EEF35948.1| pseudouridylate synthase,
           putative [Ricinus communis]
          Length = 372

 Score =  296 bits (758), Expect = 3e-78
 Identities = 146/173 (84%), Positives = 158/173 (91%)
 Frame = +2

Query: 218 MQRYLFAVEYIGTRFSGSQKQTSNYRTVVGVLEEAFHKFIGRPVTVSCSSRTDAGVHALC 397
           +QRYL AVEYIGT+F+GSQKQ  N RTVVGVLEEAF KFIG+ V+VS SSRTDAGVHAL 
Sbjct: 53  LQRYLIAVEYIGTKFAGSQKQL-NGRTVVGVLEEAFCKFIGQQVSVSLSSRTDAGVHALS 111

Query: 398 NVCHVDIERISKRKPGEVLPAHEPEVVRKAVNHFLLKNEGDVMVTDVRCVPSDFHARFKA 577
           NVCHVDIERISKRKPGEVLP HEP VVR+AVNHFL KNEGD+MVTDVRCVPSDFHARFKA
Sbjct: 112 NVCHVDIERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKA 171

Query: 578 QERTYFYRLLSGPEPLSTFEKDRAWHVPKDLDFLAMQKACRVLIGCHDFSSFR 736
           QERTYFYR LSGPEPLSTFEKDRAWHV +DLD +AMQ+AC+VL+G HDFSSFR
Sbjct: 172 QERTYFYRFLSGPEPLSTFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSSFR 224


>ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycine max]
           gi|255637177|gb|ACU18919.1| unknown [Glycine max]
          Length = 370

 Score =  291 bits (745), Expect = 1e-76
 Identities = 149/210 (70%), Positives = 167/210 (79%), Gaps = 6/210 (2%)
 Frame = +2

Query: 125 CNDSLNIQQVDXXXXXXKPVKISKTEEEE------RGMQRYLFAVEYIGTRFSGSQKQTS 286
           C+D+ NI +         P+     EEEE       G+QRYL A+EYIGTRFSGSQKQ  
Sbjct: 13  CSDN-NINRPSKISIIEYPIDSDIDEEEEMIKNPRNGIQRYLVAIEYIGTRFSGSQKQL- 70

Query: 287 NYRTVVGVLEEAFHKFIGRPVTVSCSSRTDAGVHALCNVCHVDIERISKRKPGEVLPAHE 466
           N RTVVGVLEEAF KF+G+PV+VSCSSRT AGVHAL NVCHVDI+RISKR+PGEVL  HE
Sbjct: 71  NVRTVVGVLEEAFSKFVGQPVSVSCSSRTVAGVHALSNVCHVDIQRISKRRPGEVLTPHE 130

Query: 467 PEVVRKAVNHFLLKNEGDVMVTDVRCVPSDFHARFKAQERTYFYRLLSGPEPLSTFEKDR 646
           P VV +AVNHFL K + D+MV DVRCVPSDFHARFKAQER YFYRLLSGPEPLSTFEKDR
Sbjct: 131 PAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQERIYFYRLLSGPEPLSTFEKDR 190

Query: 647 AWHVPKDLDFLAMQKACRVLIGCHDFSSFR 736
           AWHVP++L   AMQ+ACRVL+G HDFSSFR
Sbjct: 191 AWHVPEELSLPAMQEACRVLVGFHDFSSFR 220


>gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]
          Length = 361

 Score =  287 bits (734), Expect = 2e-75
 Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 6/193 (3%)
 Frame = +2

Query: 176 KPVKISKTEEE------ERGMQRYLFAVEYIGTRFSGSQKQTSNYRTVVGVLEEAFHKFI 337
           +P KISK EEE       R +QRYL AVEYIGTRF G QKQ ++ RTV GVLE+AF KF+
Sbjct: 21  RPSKISKIEEEMNQHHHHRKIQRYLVAVEYIGTRFFGFQKQLTD-RTVAGVLEDAFCKFV 79

Query: 338 GRPVTVSCSSRTDAGVHALCNVCHVDIERISKRKPGEVLPAHEPEVVRKAVNHFLLKNEG 517
           G+PV+V CSSRTDAGVHAL NVCHVDIERISKRKPGEVL  HEP VVR+AVNHFL K  G
Sbjct: 80  GQPVSVVCSSRTDAGVHALSNVCHVDIERISKRKPGEVLQPHEPAVVRRAVNHFLQKENG 139

Query: 518 DVMVTDVRCVPSDFHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPKDLDFLAMQKAC 697
           D+ V DVRCVPSDFHAR+KAQERTYFYRLLSGPE LSTFEKDRAWH+P++L+  AMQ+AC
Sbjct: 140 DLAVIDVRCVPSDFHARYKAQERTYFYRLLSGPETLSTFEKDRAWHIPEELNLPAMQEAC 199

Query: 698 RVLIGCHDFSSFR 736
           +VL+G HDFSSFR
Sbjct: 200 KVLVGHHDFSSFR 212