BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033284
         (1159 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vi...   715   0.0  
emb|CBI16435.3| unnamed protein product [Vitis vinifera]              715   0.0  
ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-lik...   692   0.0  
ref|XP_002513444.1| Type II DNA topoisomerase VI subunit B, puta...   692   0.0  
ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago trun...   687   0.0  

>ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vitis vinifera]
          Length = 656

 Score =  715 bits (1846), Expect = 0.0
 Identities = 349/386 (90%), Positives = 368/386 (95%)
 Frame = +1

Query: 1    ISIEEIGKIKFNSMIGLVDRERVDEALYDDFESVKAREKRLAKEARNQEIQAKNATLGKK 180
            I+IEEIGK KFNSMIGLVDRER+DE LYDDFE+ KAREKRLAKEAR QE+QAKNA LGKK
Sbjct: 80   ITIEEIGKSKFNSMIGLVDRERIDEELYDDFETAKAREKRLAKEARTQELQAKNAALGKK 139

Query: 181  TKEPSALKGIKGRGEASFFRVTCKDNGKGMAHDDIPNMFGRVLSGTKYGLKQTRGKFGLG 360
             KEP A KG+KGRGEASF+RVTCKDNG+GM HDDIPNMFGRVLSGTKYGLKQTRGKFGLG
Sbjct: 140  VKEPQASKGMKGRGEASFYRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLG 199

Query: 361  AKMALIWSKMSTGLPIEISSSMKGQKYTTFCRLDIDIHRNIPHIHLHEKRDNKEQWHGAE 540
            AKMALIWSKMSTGLPIEISSSMKGQ Y +FCRLDIDIHRNIPHIHLHEKRDNKE+W GAE
Sbjct: 200  AKMALIWSKMSTGLPIEISSSMKGQSYISFCRLDIDIHRNIPHIHLHEKRDNKERWCGAE 259

Query: 541  IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFVSDAVDKNVTIRFARRTDVMPPIP 720
            IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLF+FVSD  DKNVTIRFARRTD+MPP+P
Sbjct: 260  IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDTSDKNVTIRFARRTDIMPPVP 319

Query: 721  VETKYHPSAVDLLLIKRLIAETSKQNLLQFLQHEFINIGKSYAQRLIEEMGPDFSPKTAV 900
             ETKYHPSAVDLLLIKRLI+ETSK+NLLQFLQHEF+NIGKSYA+RLI EMGPDFSPK AV
Sbjct: 320  AETKYHPSAVDLLLIKRLISETSKENLLQFLQHEFVNIGKSYAERLIGEMGPDFSPKMAV 379

Query: 901  KSLTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIVKELHPDMVATYSGSAQVFE 1080
            KSLTSQQIVRI QLFRQAKFDDPSGDCLSPAGEYNLRLGI+KELHPDMVATYSGSAQVFE
Sbjct: 380  KSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 439

Query: 1081 GHPFIVEAGVSLGGKDVKQGLNIFRF 1158
            GHPF+VEAGVS+GGKDVKQGLNIFRF
Sbjct: 440  GHPFMVEAGVSIGGKDVKQGLNIFRF 465


>emb|CBI16435.3| unnamed protein product [Vitis vinifera]
          Length = 673

 Score =  715 bits (1846), Expect = 0.0
 Identities = 349/386 (90%), Positives = 368/386 (95%)
 Frame = +1

Query: 1    ISIEEIGKIKFNSMIGLVDRERVDEALYDDFESVKAREKRLAKEARNQEIQAKNATLGKK 180
            I+IEEIGK KFNSMIGLVDRER+DE LYDDFE+ KAREKRLAKEAR QE+QAKNA LGKK
Sbjct: 80   ITIEEIGKSKFNSMIGLVDRERIDEELYDDFETAKAREKRLAKEARTQELQAKNAALGKK 139

Query: 181  TKEPSALKGIKGRGEASFFRVTCKDNGKGMAHDDIPNMFGRVLSGTKYGLKQTRGKFGLG 360
             KEP A KG+KGRGEASF+RVTCKDNG+GM HDDIPNMFGRVLSGTKYGLKQTRGKFGLG
Sbjct: 140  VKEPQASKGMKGRGEASFYRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLG 199

Query: 361  AKMALIWSKMSTGLPIEISSSMKGQKYTTFCRLDIDIHRNIPHIHLHEKRDNKEQWHGAE 540
            AKMALIWSKMSTGLPIEISSSMKGQ Y +FCRLDIDIHRNIPHIHLHEKRDNKE+W GAE
Sbjct: 200  AKMALIWSKMSTGLPIEISSSMKGQSYISFCRLDIDIHRNIPHIHLHEKRDNKERWCGAE 259

Query: 541  IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFVSDAVDKNVTIRFARRTDVMPPIP 720
            IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLF+FVSD  DKNVTIRFARRTD+MPP+P
Sbjct: 260  IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDTSDKNVTIRFARRTDIMPPVP 319

Query: 721  VETKYHPSAVDLLLIKRLIAETSKQNLLQFLQHEFINIGKSYAQRLIEEMGPDFSPKTAV 900
             ETKYHPSAVDLLLIKRLI+ETSK+NLLQFLQHEF+NIGKSYA+RLI EMGPDFSPK AV
Sbjct: 320  AETKYHPSAVDLLLIKRLISETSKENLLQFLQHEFVNIGKSYAERLIGEMGPDFSPKMAV 379

Query: 901  KSLTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIVKELHPDMVATYSGSAQVFE 1080
            KSLTSQQIVRI QLFRQAKFDDPSGDCLSPAGEYNLRLGI+KELHPDMVATYSGSAQVFE
Sbjct: 380  KSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 439

Query: 1081 GHPFIVEAGVSLGGKDVKQGLNIFRF 1158
            GHPF+VEAGVS+GGKDVKQGLNIFRF
Sbjct: 440  GHPFMVEAGVSIGGKDVKQGLNIFRF 465


>ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus]
            gi|449525918|ref|XP_004169963.1| PREDICTED: DNA
            topoisomerase 6 subunit B-like [Cucumis sativus]
          Length = 696

 Score =  692 bits (1787), Expect = 0.0
 Identities = 345/409 (84%), Positives = 368/409 (89%), Gaps = 23/409 (5%)
 Frame = +1

Query: 1    ISIEEIGKIKFNSMIGLVDRERVDEALYDDFESVKAREKRLAKEARNQEIQAKNATLGKK 180
            I+IEEI K KFNSMIGLVDRERVDE LYDD+E+ KAREKRLAKEAR QEIQAKNA LGKK
Sbjct: 80   ITIEEILKTKFNSMIGLVDRERVDEELYDDYETAKAREKRLAKEARAQEIQAKNAALGKK 139

Query: 181  TKEPSALKGIKGRGEASFFRVTCKDNGKGMAHDDIPNMFGRVLSGTKYGLKQTRGKFGLG 360
             +EP+A KG+KGRGEASF+RVTCKDNGKGM HDDIPNMFGRVLSGTKYGLKQTRGKFGLG
Sbjct: 140  GREPAASKGMKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLG 199

Query: 361  AKMALIWSKMSTGLPIEISSSMKGQKYTTFCRLDIDIHRNIPHIHLHEKRDNKEQWHGAE 540
            AKMALIWSKMSTGLPIEISSSMKGQ YT+FCRLDIDIHRNIPHIH+ EKRDNK+ WHGAE
Sbjct: 200  AKMALIWSKMSTGLPIEISSSMKGQNYTSFCRLDIDIHRNIPHIHIQEKRDNKDLWHGAE 259

Query: 541  IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFVSDAVDKNVTIRFARRTDVMPPIP 720
            IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFVSD  DKN+TIRF+RRTDVMPP+P
Sbjct: 260  IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFVSDTPDKNITIRFSRRTDVMPPVP 319

Query: 721  VETKYHPSAVDLLLIKRLIAETSKQNLLQFLQHEFINIGKSYAQRLIEEMGPDFSPKTAV 900
            +ETK+HPSAVDLLLIKRLIAET+KQNLLQFLQHEF+NIGK +A+RLI EMGP+FSPK +V
Sbjct: 320  LETKHHPSAVDLLLIKRLIAETAKQNLLQFLQHEFVNIGKPFAERLIGEMGPEFSPKMSV 379

Query: 901  KSLTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIVKELHPDMVATYSG------ 1062
            KSLTSQQIVRI QLFRQAKFDDPSGDCLSPAGEYNLRLGI+KELHPDMVATYSG      
Sbjct: 380  KSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGRLYLNL 439

Query: 1063 -----------------SAQVFEGHPFIVEAGVSLGGKDVKQGLNIFRF 1158
                             SAQVFEGHPFIVEAGVS+GGKDVKQGLNIFRF
Sbjct: 440  ELCKLSSKYVNLMSNVDSAQVFEGHPFIVEAGVSIGGKDVKQGLNIFRF 488


>ref|XP_002513444.1| Type II DNA topoisomerase VI subunit B, putative [Ricinus communis]
            gi|223547352|gb|EEF48847.1| Type II DNA topoisomerase VI
            subunit B, putative [Ricinus communis]
          Length = 656

 Score =  692 bits (1787), Expect = 0.0
 Identities = 333/386 (86%), Positives = 365/386 (94%)
 Frame = +1

Query: 1    ISIEEIGKIKFNSMIGLVDRERVDEALYDDFESVKAREKRLAKEARNQEIQAKNATLGKK 180
            I+IEE+GK KFNS+IGLVDRERVDE LYDD+E+ KAREKRLAKEAR QEIQAKNA LG+K
Sbjct: 80   ITIEEMGKSKFNSLIGLVDRERVDEELYDDYETTKAREKRLAKEARAQEIQAKNAALGRK 139

Query: 181  TKEPSALKGIKGRGEASFFRVTCKDNGKGMAHDDIPNMFGRVLSGTKYGLKQTRGKFGLG 360
             KE  A KG+KGRGEASF++VTCKDNG+GM HDDIPNMFGRVLSGTKYGLKQTRGKFGLG
Sbjct: 140  VKEQPAAKGMKGRGEASFYKVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLG 199

Query: 361  AKMALIWSKMSTGLPIEISSSMKGQKYTTFCRLDIDIHRNIPHIHLHEKRDNKEQWHGAE 540
            AKMALIWSKMSTGLPI+ISSSMKGQ Y +FCRLDIDIHRN+PH+HLHEKR N ++WHGAE
Sbjct: 200  AKMALIWSKMSTGLPIDISSSMKGQNYISFCRLDIDIHRNVPHVHLHEKRKNDDRWHGAE 259

Query: 541  IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFVSDAVDKNVTIRFARRTDVMPPIP 720
            IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLF+F+SD  DKNVT++FARRTDVMPP+P
Sbjct: 260  IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFISDTSDKNVTVKFARRTDVMPPVP 319

Query: 721  VETKYHPSAVDLLLIKRLIAETSKQNLLQFLQHEFINIGKSYAQRLIEEMGPDFSPKTAV 900
            +ETK+HPS+VDLLLIKRLIAETSKQNLL FLQHEF+NIGK++A+RLI EMGP+FSPK AV
Sbjct: 320  LETKHHPSSVDLLLIKRLIAETSKQNLLHFLQHEFVNIGKAHAERLIGEMGPEFSPKMAV 379

Query: 901  KSLTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIVKELHPDMVATYSGSAQVFE 1080
            KSLT QQIVRI QLFRQAKFDDP+GDCLSPAGEYNLRLGI+KELHPDMVATYSGSAQVFE
Sbjct: 380  KSLTDQQIVRIHQLFRQAKFDDPAGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 439

Query: 1081 GHPFIVEAGVSLGGKDVKQGLNIFRF 1158
            GHPFIVEAGVS+GGKDVKQGLNIFRF
Sbjct: 440  GHPFIVEAGVSVGGKDVKQGLNIFRF 465


>ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago truncatula]
            gi|355486528|gb|AES67731.1| DNA topoisomerase 6 subunit B
            [Medicago truncatula]
          Length = 671

 Score =  687 bits (1774), Expect = 0.0
 Identities = 338/386 (87%), Positives = 360/386 (93%)
 Frame = +1

Query: 1    ISIEEIGKIKFNSMIGLVDRERVDEALYDDFESVKAREKRLAKEARNQEIQAKNATLGKK 180
            I+IEEI K KFNSMIGLVDRERVD ALYDDFE+ KAREKRLAKEAR QE+QAKNA LGKK
Sbjct: 78   ITIEEIIKSKFNSMIGLVDRERVDAALYDDFETAKAREKRLAKEARAQELQAKNAALGKK 137

Query: 181  TKEPSALKGIKGRGEASFFRVTCKDNGKGMAHDDIPNMFGRVLSGTKYGLKQTRGKFGLG 360
             K+  A KG+KGRGEASF+RVTCKDNGKGM HDDIPNMFGRVLSGTKYGLKQTRGKFGLG
Sbjct: 138  VKDTPASKGMKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLG 197

Query: 361  AKMALIWSKMSTGLPIEISSSMKGQKYTTFCRLDIDIHRNIPHIHLHEKRDNKEQWHGAE 540
            AKMALIWSKMSTGLPIEISSSMK Q Y +FCRLDIDIH+NIPH+HLHEKR+N + WHGAE
Sbjct: 198  AKMALIWSKMSTGLPIEISSSMKKQNYISFCRLDIDIHKNIPHVHLHEKRENNQNWHGAE 257

Query: 541  IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFVSDAVDKNVTIRFARRTDVMPPIP 720
            IQVVIEGNWTTYRSKILHYMRQMAVITPYAQF F+FVSDA DKNVT+RFARRTDVMPPIP
Sbjct: 258  IQVVIEGNWTTYRSKILHYMRQMAVITPYAQFQFKFVSDAPDKNVTVRFARRTDVMPPIP 317

Query: 721  VETKYHPSAVDLLLIKRLIAETSKQNLLQFLQHEFINIGKSYAQRLIEEMGPDFSPKTAV 900
            +ETK+HPS+VDLLLIKRLI ETSKQNLLQFLQHEF+NI K +A+RLI EMGPDFS K AV
Sbjct: 318  LETKHHPSSVDLLLIKRLITETSKQNLLQFLQHEFVNISKPHAERLIGEMGPDFSSKMAV 377

Query: 901  KSLTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIVKELHPDMVATYSGSAQVFE 1080
            KSLTSQQ+VRI QLFRQAKFDDPSG CLSPAGEYNLRLGI+KELHPDMVATYSGSAQVFE
Sbjct: 378  KSLTSQQLVRIHQLFRQAKFDDPSGHCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFE 437

Query: 1081 GHPFIVEAGVSLGGKDVKQGLNIFRF 1158
            GHPFIVEAGVS+GGKDVKQGLNIFRF
Sbjct: 438  GHPFIVEAGVSVGGKDVKQGLNIFRF 463