BLASTX nr result
ID: Coptis25_contig00033258
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00033258
(711 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi... 285 5e-75
emb|CBI19765.3| unnamed protein product [Vitis vinifera] 285 5e-75
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,... 281 9e-74
ref|XP_002300741.1| predicted protein [Populus trichocarpa] gi|2... 274 1e-71
ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arab... 268 8e-70
>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like
[Vitis vinifera]
Length = 1545
Score = 285 bits (730), Expect = 5e-75
Identities = 138/242 (57%), Positives = 171/242 (70%), Gaps = 6/242 (2%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
RQ+NL+R+ GI+SIKVLYD+NG+A WG++ GGTGG ++DKIV D+P+E LTH+TGYY P
Sbjct: 1204 RQINLSRNIGIVSIKVLYDQNGQAVWGSKNGGTGGFRNDKIVIDYPYEVLTHITGYYAPT 1263
Query: 181 MYMGPIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHVIE 360
M MGP +IKSL+FHT K KYGP+G+EQGTPFSSN+KEG IVGF G+ G +ID+IGVH+IE
Sbjct: 1264 MVMGPNIIKSLTFHTTKTKYGPFGEEQGTPFSSNIKEGVIVGFHGRTGLFIDAIGVHMIE 1323
Query: 361 GKV--STLQPSRSFVPHNMDDIRI----TEVDNPQWSNKLVLAKRGGQNEEVTYGVVKEP 522
GK T PS + N I++ EVD P W + + +GG EEV GVVKEP
Sbjct: 1324 GKARPPTRPPSNKQLNQNQSQIQVLDNAAEVDRPLWYSNKSVPTKGGPFEEVGSGVVKEP 1383
Query: 523 APCXXXXXXXXXXXXXXXXVFTGVKQIFLTRTEVICSIQIEYDRNGQSVWSVRHGGSGEA 702
APC VF+G+KQI+LTR E ICSIQIEY RNGQS+WS +HGG
Sbjct: 1384 APCGPGPWGGDGGRPWDDGVFSGIKQIYLTRAEAICSIQIEYARNGQSIWSTKHGGDYGT 1443
Query: 703 TT 708
TT
Sbjct: 1444 TT 1445
Score = 126 bits (316), Expect = 5e-27
Identities = 56/129 (43%), Positives = 84/129 (65%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
RQ+ + GI SI + YD+NG + W ++GG+GG +++++ D P E LT + G+YG L
Sbjct: 973 RQLVIAHGVGIDSILIEYDKNGSSVWSEKHGGSGGTRTNRVKLDSPDEFLTSIHGHYGSL 1032
Query: 181 MYMGPIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHVIE 360
+ GP+ ++SL+ +NK+ YGP+G EQG FS G I+GF GK GWY+D+IGVH+
Sbjct: 1033 LERGPVFVRSLTLESNKRTYGPFGIEQGIYFSLPTTGGKIIGFHGKSGWYLDAIGVHLKP 1092
Query: 361 GKVSTLQPS 387
K S + S
Sbjct: 1093 HKPSPFKSS 1101
Score = 114 bits (286), Expect = 2e-23
Identities = 55/132 (41%), Positives = 87/132 (65%), Gaps = 3/132 (2%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
+Q+ LTR+ I SI++ Y RNG++ W ++GG G + ++ ++P E ++ + GYYGP+
Sbjct: 1408 KQIYLTRAEAICSIQIEYARNGQSIWSTKHGGDYGTTTHRVKLEYPHEVVSCICGYYGPI 1467
Query: 181 MYMGPI-VIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHVI 357
P IKSL+F+T++ KYGP+G+E GT F+S EG +VGF G+ Y+D+IGVH+
Sbjct: 1468 SINEPWNAIKSLTFYTSRGKYGPFGEEIGTYFTSTRTEGKVVGFHGRSSLYLDAIGVHMQ 1527
Query: 358 E--GKVSTLQPS 387
G TL+P+
Sbjct: 1528 HWLGDQRTLKPN 1539
>emb|CBI19765.3| unnamed protein product [Vitis vinifera]
Length = 670
Score = 285 bits (730), Expect = 5e-75
Identities = 138/242 (57%), Positives = 171/242 (70%), Gaps = 6/242 (2%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
RQ+NL+R+ GI+SIKVLYD+NG+A WG++ GGTGG ++DKIV D+P+E LTH+TGYY P
Sbjct: 329 RQINLSRNIGIVSIKVLYDQNGQAVWGSKNGGTGGFRNDKIVIDYPYEVLTHITGYYAPT 388
Query: 181 MYMGPIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHVIE 360
M MGP +IKSL+FHT K KYGP+G+EQGTPFSSN+KEG IVGF G+ G +ID+IGVH+IE
Sbjct: 389 MVMGPNIIKSLTFHTTKTKYGPFGEEQGTPFSSNIKEGVIVGFHGRTGLFIDAIGVHMIE 448
Query: 361 GKV--STLQPSRSFVPHNMDDIRI----TEVDNPQWSNKLVLAKRGGQNEEVTYGVVKEP 522
GK T PS + N I++ EVD P W + + +GG EEV GVVKEP
Sbjct: 449 GKARPPTRPPSNKQLNQNQSQIQVLDNAAEVDRPLWYSNKSVPTKGGPFEEVGSGVVKEP 508
Query: 523 APCXXXXXXXXXXXXXXXXVFTGVKQIFLTRTEVICSIQIEYDRNGQSVWSVRHGGSGEA 702
APC VF+G+KQI+LTR E ICSIQIEY RNGQS+WS +HGG
Sbjct: 509 APCGPGPWGGDGGRPWDDGVFSGIKQIYLTRAEAICSIQIEYARNGQSIWSTKHGGDYGT 568
Query: 703 TT 708
TT
Sbjct: 569 TT 570
Score = 126 bits (316), Expect = 5e-27
Identities = 56/129 (43%), Positives = 84/129 (65%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
RQ+ + GI SI + YD+NG + W ++GG+GG +++++ D P E LT + G+YG L
Sbjct: 63 RQLVIAHGVGIDSILIEYDKNGSSVWSEKHGGSGGTRTNRVKLDSPDEFLTSIHGHYGSL 122
Query: 181 MYMGPIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHVIE 360
+ GP+ ++SL+ +NK+ YGP+G EQG FS G I+GF GK GWY+D+IGVH+
Sbjct: 123 LERGPVFVRSLTLESNKRTYGPFGIEQGIYFSLPTTGGKIIGFHGKSGWYLDAIGVHLKP 182
Query: 361 GKVSTLQPS 387
K S + S
Sbjct: 183 HKPSPFKSS 191
Score = 114 bits (286), Expect = 2e-23
Identities = 55/132 (41%), Positives = 87/132 (65%), Gaps = 3/132 (2%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
+Q+ LTR+ I SI++ Y RNG++ W ++GG G + ++ ++P E ++ + GYYGP+
Sbjct: 533 KQIYLTRAEAICSIQIEYARNGQSIWSTKHGGDYGTTTHRVKLEYPHEVVSCICGYYGPI 592
Query: 181 MYMGPI-VIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHVI 357
P IKSL+F+T++ KYGP+G+E GT F+S EG +VGF G+ Y+D+IGVH+
Sbjct: 593 SINEPWNAIKSLTFYTSRGKYGPFGEEIGTYFTSTRTEGKVVGFHGRSSLYLDAIGVHMQ 652
Query: 358 E--GKVSTLQPS 387
G TL+P+
Sbjct: 653 HWLGDQRTLKPN 664
>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1218
Score = 281 bits (719), Expect = 9e-74
Identities = 137/238 (57%), Positives = 177/238 (74%), Gaps = 2/238 (0%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
RQ+ L+RS GI+SI+V YDRNG+A WG+++GGTGG K++KI FD+P+E LTH++G YGPL
Sbjct: 885 RQIYLSRSIGIVSIRVQYDRNGQAVWGSKHGGTGGFKTEKITFDYPYEILTHISGTYGPL 944
Query: 181 MYMGPIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHVIE 360
M+MGP +IKSL+F+TNK K+GP+GDEQG FS+ G IVGF GK G ++D+IGV+++E
Sbjct: 945 MFMGPNIIKSLTFYTNKGKHGPFGDEQGPSFSTKPNGGKIVGFHGKEGLFLDAIGVNLME 1004
Query: 361 GKVSTLQPSRSFVPHNM--DDIRITEVDNPQWSNKLVLAKRGGQNEEVTYGVVKEPAPCX 534
GKV +P+R ++ + + +TE+DN WSNKLVLA+R G +EV VVKEPAPC
Sbjct: 1005 GKV---KPARHYLTDAIIQAEADVTEIDNSPWSNKLVLARR-GPTDEVACSVVKEPAPCG 1060
Query: 535 XXXXXXXXXXXXXXXVFTGVKQIFLTRTEVICSIQIEYDRNGQSVWSVRHGGSGEATT 708
VF+G+KQIF+TR E ICSIQIEYDRNGQSVWSVRHGGSG T
Sbjct: 1061 PGPWGGDGGRPWDDGVFSGIKQIFVTRAEAICSIQIEYDRNGQSVWSVRHGGSGGTAT 1118
Score = 148 bits (373), Expect = 1e-33
Identities = 93/271 (34%), Positives = 148/271 (54%), Gaps = 34/271 (12%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
RQ+ + +GI SI++ YD+ G + W ++GG GG ++DK+ D+P E L V+G+YG L
Sbjct: 655 RQLVIVHGSGIDSIQIEYDKKGTSIWSEKHGGNGGNRTDKVKLDYPDEYLASVSGHYGSL 714
Query: 181 MYMGPIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVH--- 351
GP+ ++SL+F +NK+ YGP+G EQGT FS + G IVGF GK G+++D+IG++
Sbjct: 715 NQWGPVFVRSLTFQSNKRTYGPFGVEQGTYFSFPMTGGRIVGFHGKGGYFVDAIGIYLKP 774
Query: 352 VIEGKVS-TLQPSRSFVPHNMDDIRITEVDNPQW-SNKLVLAKRGGQNEE-----VTYGV 510
V + K S L ++SFV + ++I + + S +V+A R Q EE T +
Sbjct: 775 VPQQKSSKALVQAKSFVNNGTENIGYSVIQGTAGNSYDIVVAVR--QKEENGSLLKTKPL 832
Query: 511 VKEPA------PCXXXXXXXXXXXXXXXXVFT------------------GVKQIFLTRT 618
+K+ + V T G++QI+L+R+
Sbjct: 833 LKQISSESSDDEANDKTLRNESLPSKPESVITHGPWGGTGGYTFDDGTNTGIRQIYLSRS 892
Query: 619 EVICSIQIEYDRNGQSVWSVRHGGSGEATTK 711
I SI+++YDRNGQ+VW +HGG+G T+
Sbjct: 893 IGIVSIRVQYDRNGQAVWGSKHGGTGGFKTE 923
Score = 124 bits (312), Expect = 1e-26
Identities = 55/119 (46%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
+Q+ +TR+ I SI++ YDRNG++ W R+GG+GG ++++ ++P E LT ++GYYGP
Sbjct: 1081 KQIFVTRAEAICSIQIEYDRNGQSVWSVRHGGSGGTATNRVKLEYPHEVLTRISGYYGPA 1140
Query: 181 MY-MGPIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHV 354
P V+KSL+F+T++ +YGP+G+E GT F+S EG +VGF G+ G Y+D+IGVH+
Sbjct: 1141 SRDERPTVVKSLTFYTSRGQYGPFGEEIGTFFTSTTTEGKVVGFHGRCGAYLDAIGVHM 1199
>ref|XP_002300741.1| predicted protein [Populus trichocarpa] gi|222842467|gb|EEE80014.1|
predicted protein [Populus trichocarpa]
Length = 520
Score = 274 bits (701), Expect = 1e-71
Identities = 133/241 (55%), Positives = 176/241 (73%), Gaps = 5/241 (2%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
RQ++L+R GI SI+V YDR+G+ATWG+++G GG KSDKI+FD+P+E LT VTG YGPL
Sbjct: 185 RQIHLSRHVGIASIRVQYDRDGQATWGSKHGKGGGFKSDKIIFDYPYEILTRVTGTYGPL 244
Query: 181 MYMGPIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHVIE 360
MYMGP +I+SL+F+TNK K+GP+G+EQG F++ + EG I+GF G+ G+ +D+IGVHV+E
Sbjct: 245 MYMGPNIIRSLTFYTNKGKHGPFGEEQGPTFTNKIDEGKIIGFHGREGFLLDAIGVHVLE 304
Query: 361 GKVSTLQPSRSFVPHNMDDIR-----ITEVDNPQWSNKLVLAKRGGQNEEVTYGVVKEPA 525
G T++P++ H D I+ + E+DN WSNKLV A R GQ EEV GV+KEPA
Sbjct: 305 G---TVKPAKH---HLSDAIKQAEADVAEIDNSPWSNKLV-AARPGQTEEVVCGVIKEPA 357
Query: 526 PCXXXXXXXXXXXXXXXXVFTGVKQIFLTRTEVICSIQIEYDRNGQSVWSVRHGGSGEAT 705
PC VF+G+KQIF+TR E +CSIQIEYDRNGQSVWS++HGG+G
Sbjct: 358 PCGPGPWGGDGGRPWDDGVFSGIKQIFITRAEAMCSIQIEYDRNGQSVWSIKHGGNGGTA 417
Query: 706 T 708
T
Sbjct: 418 T 418
Score = 117 bits (293), Expect = 2e-24
Identities = 54/120 (45%), Positives = 82/120 (68%), Gaps = 2/120 (1%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
+Q+ +TR+ + SI++ YDRNG++ W ++GG GG + ++ P E L ++GYYGP+
Sbjct: 381 KQIFITRAEAMCSIQIEYDRNGQSVWSIKHGGNGGTATHRVKLQCPHEVLVCLSGYYGPI 440
Query: 181 MYMG--PIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHV 354
G P VIKSL+FHT++ YGP+G+E GT F+S EG +VGF G+ Y+D+IGVH+
Sbjct: 441 GSDGNSPKVIKSLTFHTSRGNYGPFGEEIGTFFTSTTTEGKVVGFHGRSSAYMDAIGVHM 500
Score = 113 bits (282), Expect = 4e-23
Identities = 70/215 (32%), Positives = 107/215 (49%), Gaps = 23/215 (10%)
Frame = +1
Query: 121 IVFDHPFEALTHVTGYYGPLMYMGPIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTI 300
+ D P E LT V GYYG L GP+ ++SL+F +NKK YGP+G EQGT FS + G I
Sbjct: 5 VKLDCPDEFLTSVHGYYGSLDGWGPVFVRSLTFRSNKKTYGPFGVEQGTYFSFPMSGGKI 64
Query: 301 VGFFGKRGWYIDSIGVHV----IEGKVSTLQPSRSFVPHNMDDIRITEVDNPQWSNKLVL 468
VGF GK GWY+D+IG+++ + L S+S++ + ++I + + + +
Sbjct: 65 VGFHGKSGWYLDAIGIYLKPLQKQKTSKALVQSKSYINNGTENISYSMMQGAGNGFDIFV 124
Query: 469 A--------KRGGQNEEVTYGVV-----------KEPAPCXXXXXXXXXXXXXXXXVFTG 591
A K QN + Y ++ K +TG
Sbjct: 125 AVKQKDDFGKFSTQN-SLEYSIMIQTIATERVPSKTEGVIVHGPWGGVGGSKFDDGTYTG 183
Query: 592 VKQIFLTRTEVICSIQIEYDRNGQSVWSVRHGGSG 696
++QI L+R I SI+++YDR+GQ+ W +HG G
Sbjct: 184 IRQIHLSRHVGIASIRVQYDRDGQATWGSKHGKGG 218
>ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
lyrata] gi|297338906|gb|EFH69323.1| hypothetical protein
ARALYDRAFT_472198 [Arabidopsis lyrata subsp. lyrata]
Length = 1490
Score = 268 bits (685), Expect = 8e-70
Identities = 137/241 (56%), Positives = 172/241 (71%), Gaps = 6/241 (2%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
RQ+NL+RS GI+SIKV YD G+A WG+++GG GG K DKIVFD+P E LTHVTG YGPL
Sbjct: 1151 RQINLSRSVGIVSIKVCYDFRGQAVWGSKHGGMGGFKHDKIVFDYPSEVLTHVTGTYGPL 1210
Query: 181 MYMGPIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHVIE 360
MYMGP VIKSL+F TN+ K+GPYG+EQG F+ + EG +VGF G+ G ++DSIGVHV+E
Sbjct: 1211 MYMGPNVIKSLTFRTNRGKHGPYGEEQGPSFTHQIDEGKVVGFLGREGLFLDSIGVHVME 1270
Query: 361 GKVSTLQ---PSRSFVPHNMDDIRITEVDNPQWSNKLVLAKRGGQNEEVTYGVVKEPAPC 531
K+S+L+ P+ S VPHN + +++N W+NKLVLA G EEV GVVKEP P
Sbjct: 1271 CKISSLKPASPNNSIVPHN--NSGTAQIENSPWANKLVLA-ANGHGEEVDRGVVKEPTPS 1327
Query: 532 XXXXXXXXXXXXXXXXVFTGVKQIFLTR-TEVICSIQIEYDRNGQSVWSVRHGG--SGEA 702
VF+G+KQIF+TR +VI SIQ+EYDRNGQSVWS +HGG +G A
Sbjct: 1328 GSGPWGGDGGQAWDDGVFSGIKQIFVTRGNDVISSIQVEYDRNGQSVWSTKHGGDNNGVA 1387
Query: 703 T 705
T
Sbjct: 1388 T 1388
Score = 120 bits (301), Expect = 3e-25
Identities = 53/118 (44%), Positives = 76/118 (64%)
Frame = +1
Query: 1 RQVNLTRSAGIISIKVLYDRNGKATWGNRYGGTGGMKSDKIVFDHPFEALTHVTGYYGPL 180
+Q+ + +GI SI+V YD+NG + W + GG GG K DK+ D+P E L + G YG
Sbjct: 924 KQIIIAHGSGIDSIQVEYDKNGSSVWSEKRGGKGGKKFDKVKLDYPHEYLISINGTYGSF 983
Query: 181 MYMGPIVIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVHV 354
G + ++SL+F +N++KYGP+G E GT F+ IVGF GK GWY+D+IGVH+
Sbjct: 984 DVWGTLCVRSLTFESNRRKYGPFGVESGTFFALPKSGSKIVGFHGKAGWYLDAIGVHI 1041
Score = 109 bits (272), Expect = 6e-22
Identities = 53/121 (43%), Positives = 84/121 (69%), Gaps = 3/121 (2%)
Frame = +1
Query: 1 RQVNLTRSAGIIS-IKVLYDRNGKATWGNRYGG-TGGMKSDKIVFDHPFEALTHVTGYYG 174
+Q+ +TR +IS I+V YDRNG++ W ++GG G+ + +I ++P E +T ++GYYG
Sbjct: 1349 KQIFVTRGNDVISSIQVEYDRNGQSVWSTKHGGDNNGVATHRIKLEYPNETITCISGYYG 1408
Query: 175 PLMYMGPI-VIKSLSFHTNKKKYGPYGDEQGTPFSSNLKEGTIVGFFGKRGWYIDSIGVH 351
PL V+KSLSF+T++ KYGPYG+E GT F+S +G ++GF G+ ++D+IGVH
Sbjct: 1409 PLNNSDRYNVVKSLSFYTSRGKYGPYGEETGTFFTSTTTQGKVLGFHGRSSSHLDAIGVH 1468
Query: 352 V 354
+
Sbjct: 1469 M 1469