BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033244
         (267 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
emb|CBI18917.3| unnamed protein product [Vitis vinifera]              142   2e-32
ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containi...   142   2e-32
emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]   142   2e-32
ref|XP_002523825.1| pentatricopeptide repeat-containing protein,...   140   1e-31

>ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  145 bits (366), Expect = 3e-33
 Identities = 66/88 (75%), Positives = 76/88 (86%)
 Frame = -3

Query: 265 RLDCPADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVN 86
           RL CPADTI+YNF+IESHCRD+NLEEA K+LN MVKKG + NASTFN IF CI KL DVN
Sbjct: 380 RLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVN 439

Query: 85  AAHRMYTKMKEMNCTPNTVTYNVLMKMF 2
            AHRMY +MKE+NC PNT+TYN+LM+MF
Sbjct: 440 GAHRMYARMKELNCQPNTLTYNILMRMF 467



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 25/77 (32%), Positives = 44/77 (57%)
 Frame = -3

Query: 238 TYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVNAAHRMYTKM 59
           TY+ +I+S CR   +  A  V ++M+  GC  NA TFN + R  +K        ++Y +M
Sbjct: 319 TYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQM 378

Query: 58  KEMNCTPNTVTYNVLMK 8
           K + C  +T++YN +++
Sbjct: 379 KRLGCPADTISYNFIIE 395


>emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  142 bits (359), Expect = 2e-32
 Identities = 66/88 (75%), Positives = 75/88 (85%)
 Frame = -3

Query: 265 RLDCPADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVN 86
           RL CP D ITYNFLIESHCRDDNLEEA K+LN  VKKGC+ NAS+FNPIF CI KL DVN
Sbjct: 313 RLGCPPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVN 371

Query: 85  AAHRMYTKMKEMNCTPNTVTYNVLMKMF 2
           +AHRM+ KMK++ C PNTVTYN+LM+MF
Sbjct: 372 SAHRMFAKMKDLKCRPNTVTYNILMRMF 399



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 26/77 (33%), Positives = 44/77 (57%)
 Frame = -3

Query: 238 TYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVNAAHRMYTKM 59
           TY+ +I++ CR   +  A  V ++M+  GC  NA TFN + R  +K        ++Y +M
Sbjct: 252 TYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQM 311

Query: 58  KEMNCTPNTVTYNVLMK 8
           K + C P+ +TYN L++
Sbjct: 312 KRLGCPPDAITYNFLIE 328



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 23/81 (28%), Positives = 44/81 (54%)
 Frame = -3

Query: 247 DTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVNAAHRMY 68
           D + Y  L+   CR  N+ EA +V  +M   G   N  T++ +   + +   +  AH ++
Sbjct: 214 DVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVF 273

Query: 67  TKMKEMNCTPNTVTYNVLMKM 5
           ++M ++ C PN +T+N LM++
Sbjct: 274 SEMIDVGCDPNAITFNNLMRV 294


>ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  142 bits (359), Expect = 2e-32
 Identities = 66/88 (75%), Positives = 75/88 (85%)
 Frame = -3

Query: 265 RLDCPADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVN 86
           RL CP D ITYNFLIESHCRDDNLEEA K+LN  VKKGC+ NAS+FNPIF CI KL DVN
Sbjct: 348 RLGCPPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVN 406

Query: 85  AAHRMYTKMKEMNCTPNTVTYNVLMKMF 2
           +AHRM+ KMK++ C PNTVTYN+LM+MF
Sbjct: 407 SAHRMFAKMKDLKCRPNTVTYNILMRMF 434



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 26/77 (33%), Positives = 44/77 (57%)
 Frame = -3

Query: 238 TYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVNAAHRMYTKM 59
           TY+ +I++ CR   +  A  V ++M+  GC  NA TFN + R  +K        ++Y +M
Sbjct: 287 TYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQM 346

Query: 58  KEMNCTPNTVTYNVLMK 8
           K + C P+ +TYN L++
Sbjct: 347 KRLGCPPDAITYNFLIE 363



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 23/81 (28%), Positives = 44/81 (54%)
 Frame = -3

Query: 247 DTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVNAAHRMY 68
           D + Y  L+   CR  N+ EA +V  +M   G   N  T++ +   + +   +  AH ++
Sbjct: 249 DVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVF 308

Query: 67  TKMKEMNCTPNTVTYNVLMKM 5
           ++M ++ C PN +T+N LM++
Sbjct: 309 SEMIDVGCDPNAITFNNLMRV 329


>emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  142 bits (359), Expect = 2e-32
 Identities = 66/88 (75%), Positives = 75/88 (85%)
 Frame = -3

Query: 265  RLDCPADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVN 86
            RL CP D ITYNFLIESHCRDDNLEEA K+LN  VKKGC+ NAS+FNPIF CI KL DVN
Sbjct: 1380 RLGCPPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVN 1438

Query: 85   AAHRMYTKMKEMNCTPNTVTYNVLMKMF 2
            +AHRM+ KMK++ C PNTVTYN+LM+MF
Sbjct: 1439 SAHRMFAKMKDLKCRPNTVTYNILMRMF 1466



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 26/77 (33%), Positives = 44/77 (57%)
 Frame = -3

Query: 238  TYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVNAAHRMYTKM 59
            TY+ +I++ CR   +  A  V ++M+  GC  NA TFN + R  +K        ++Y +M
Sbjct: 1319 TYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQM 1378

Query: 58   KEMNCTPNTVTYNVLMK 8
            K + C P+ +TYN L++
Sbjct: 1379 KRLGCPPDAITYNFLIE 1395



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 23/81 (28%), Positives = 44/81 (54%)
 Frame = -3

Query: 247  DTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVNAAHRMY 68
            D + Y  L+   CR  N+ EA +V  +M   G   N  T++ +   + +   +  AH ++
Sbjct: 1281 DVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVF 1340

Query: 67   TKMKEMNCTPNTVTYNVLMKM 5
            ++M ++ C PN +T+N LM++
Sbjct: 1341 SEMIDVGCDPNAITFNNLMRV 1361


>ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536913|gb|EEF38551.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 528

 Score =  140 bits (352), Expect = 1e-31
 Identities = 63/88 (71%), Positives = 73/88 (82%)
 Frame = -3

Query: 265 RLDCPADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVN 86
           R+ CP DT+TYNFLIESHC+D NL+EA KVLN MVKKGCS NASTFN +F  I KL+DVN
Sbjct: 344 RMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVN 403

Query: 85  AAHRMYTKMKEMNCTPNTVTYNVLMKMF 2
            AHR+Y KMKE+ C  NTVTYN+LM+MF
Sbjct: 404 GAHRLYAKMKELKCKANTVTYNILMRMF 431



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/83 (34%), Positives = 45/83 (54%)
 Frame = -3

Query: 256 CPADTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVNAAH 77
           C  +  TY  +I++ CR   +  A  V  +M+  GC  N+ TFN + R  +K        
Sbjct: 277 CMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVL 336

Query: 76  RMYTKMKEMNCTPNTVTYNVLMK 8
           ++Y +MK M C P+TVTYN L++
Sbjct: 337 QVYNQMKRMGCPPDTVTYNFLIE 359



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 24/81 (29%), Positives = 44/81 (54%)
 Frame = -3

Query: 247 DTITYNFLIESHCRDDNLEEATKVLNQMVKKGCSGNASTFNPIFRCIMKLKDVNAAHRMY 68
           D I Y  L+   CR  N+ EA +V  +M   GC  N  T+  +   + +   +  AH ++
Sbjct: 245 DVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVF 304

Query: 67  TKMKEMNCTPNTVTYNVLMKM 5
            +M ++ C PN++T+N L+++
Sbjct: 305 AEMLDVGCEPNSITFNNLLRV 325