BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033241
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26162.3| unnamed protein product [Vitis vinifera]              118   6e-25
ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containi...   110   2e-22
ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containi...   110   2e-22
ref|XP_003617724.1| Pentatricopeptide repeat-containing protein ...   108   6e-22

>emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  118 bits (295), Expect = 6e-25
 Identities = 54/101 (53%), Positives = 69/101 (68%)
 Frame = -2

Query: 316 YAPHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAW 137
           YAP RVMY TMI GLC M+ +  A+KLWFEM+ KGF+PNE+TYN  +HG  K G  + AW
Sbjct: 363 YAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAW 422

Query: 136 KLWKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
           K+++EM D+G  +   +YN MI      GK+ EA  LFEEM
Sbjct: 423 KMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEM 463



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 31/100 (31%), Positives = 52/100 (52%)
 Frame = -2

Query: 313 APHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAWK 134
           AP    Y  +++GLC+  + P   +++ ++  +G+ P+   Y   +HG C+      A K
Sbjct: 329 APDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARK 388

Query: 133 LWKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
           LW EM  +G   N++ YN MI  +   G L EA  ++ EM
Sbjct: 389 LWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREM 428



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/101 (32%), Positives = 50/101 (49%)
 Frame = -2

Query: 316 YAPHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAW 137
           Y    V YN MI GLC   ++  A  L+ EM  KG + N  TYN  + G CK G+     
Sbjct: 433 YGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGA 492

Query: 136 KLWKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
            L  E+ D+G++ +  +Y  +I      G +  A  L+++M
Sbjct: 493 NLLYELLDQGIQPSAASYAPLIDKLCQEGDMQNAKILWDDM 533


>ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Glycine max]
          Length = 577

 Score =  117 bits (293), Expect = 1e-24
 Identities = 55/101 (54%), Positives = 72/101 (71%)
 Frame = -2

Query: 316 YAPHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAW 137
           Y P RVMY T+I GLCEM+++  A+KLWFEM+ KGF PNE+TYNV MHG CK G    A 
Sbjct: 314 YFPDRVMYTTVIKGLCEMQRLGEARKLWFEMIKKGFQPNEYTYNVMMHGYCKIGDLAEAR 373

Query: 136 KLWKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
           K++++M DRG  +   +Y TMI+   L G+ +EA +LFEEM
Sbjct: 374 KIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEM 414



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 34/101 (33%), Positives = 51/101 (50%)
 Frame = -2

Query: 316 YAPHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAW 137
           YA   V Y TMI GLC   +   AQ L+ EM  KG +P+  TYN  +   CK  +   A 
Sbjct: 384 YAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIVPDLITYNCLIKALCKEVKIVKAR 443

Query: 136 KLWKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
           KL   +  +GL  + F+++ +I    + G    A  L+++M
Sbjct: 444 KLLNLLLAQGLELSVFSFSPLIKQLCIVGNTKGAITLWKDM 484



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 29/94 (30%), Positives = 50/94 (53%)
 Frame = -2

Query: 295 YNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAWKLWKEMS 116
           Y  +I GL +M+     Q ++ ++  +G+ P+   Y   + G C+  +   A KLW EM 
Sbjct: 287 YQEIIYGLLKMKNSEGFQ-VFNDLKDRGYFPDRVMYTTVIKGLCEMQRLGEARKLWFEMI 345

Query: 115 DRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
            +G + N++ YN M+  +   G L EA  +FE+M
Sbjct: 346 KKGFQPNEYTYNVMMHGYCKIGDLAEARKIFEDM 379


>ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/102 (49%), Positives = 67/102 (65%)
 Frame = -2

Query: 316 YAPHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAW 137
           YAP  VMY T+I G C+M Q+  A KLWFEM+ KGF+PNE++YN  ++G CK G  D A 
Sbjct: 364 YAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAM 423

Query: 136 KLWKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEMP 11
           KL+K+M D G ++   + NT+I    L G+ +EA   F EMP
Sbjct: 424 KLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMP 465



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/99 (35%), Positives = 56/99 (56%)
 Frame = -2

Query: 310 PHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAWKL 131
           P    Y  +I+G C+      A +++  +  +G+ P+   Y   +HG CK GQ + A KL
Sbjct: 331 PDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKL 390

Query: 130 WKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
           W EM D+G   N+++YNT+I  F   G L+EA  L+++M
Sbjct: 391 WFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKM 429



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 30/101 (29%), Positives = 54/101 (53%)
 Frame = -2

Query: 316 YAPHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAW 137
           + P+   YNT+I G C++  +  A KL+ +ML  G+     + N  + G C  G+ D A+
Sbjct: 399 FLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAY 458

Query: 136 KLWKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
             ++EM  + +  +   YNT+I  F   GK+ ++  L +E+
Sbjct: 459 DFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKEL 499


>ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/102 (49%), Positives = 67/102 (65%)
 Frame = -2

Query: 316 YAPHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAW 137
           YAP  VMY T+I G C+M Q+  A KLWFEM+ KGF+PNE++YN  ++G CK G  D A 
Sbjct: 328 YAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAM 387

Query: 136 KLWKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEMP 11
           KL+K+M D G ++   + NT+I    L G+ +EA   F EMP
Sbjct: 388 KLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMP 429



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/99 (35%), Positives = 56/99 (56%)
 Frame = -2

Query: 310 PHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAWKL 131
           P    Y  +I+G C+      A +++  +  +G+ P+   Y   +HG CK GQ + A KL
Sbjct: 295 PDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKL 354

Query: 130 WKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
           W EM D+G   N+++YNT+I  F   G L+EA  L+++M
Sbjct: 355 WFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKM 393



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 30/101 (29%), Positives = 54/101 (53%)
 Frame = -2

Query: 316 YAPHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAW 137
           + P+   YNT+I G C++  +  A KL+ +ML  G+     + N  + G C  G+ D A+
Sbjct: 363 FLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAY 422

Query: 136 KLWKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
             ++EM  + +  +   YNT+I  F   GK+ ++  L +E+
Sbjct: 423 DFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKEL 463


>ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355519059|gb|AET00683.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 861

 Score =  108 bits (269), Expect = 6e-22
 Identities = 51/103 (49%), Positives = 69/103 (66%)
 Frame = -2

Query: 316 YAPHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAW 137
           Y P RVMY T+I G C+M  +  A+KLWFEM+ KG +PNE+TYNV ++G CK   F  A 
Sbjct: 302 YFPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEAR 361

Query: 136 KLWKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEMPK 8
           KL+ +M  RG  +N  +Y+TMI+   L GK +EA +LF EM +
Sbjct: 362 KLYDDMCGRGYAENVVSYSTMISGLYLHGKTDEALSLFHEMSR 404



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 31/99 (31%), Positives = 55/99 (55%)
 Frame = -2

Query: 310 PHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAWKL 131
           P+   YN MI G C++R    A+KL+ +M  +G+  N  +Y+  + G    G+ D A  L
Sbjct: 339 PNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISGLYLHGKTDEALSL 398

Query: 130 WKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
           + EMS +G+ ++  +YN++I      G+L +A  L  ++
Sbjct: 399 FHEMSRKGIARDLISYNSLIKGLCQEGELAKATNLLNKL 437



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/99 (30%), Positives = 50/99 (50%)
 Frame = -2

Query: 310 PHRVMYNTMIDGLCEMRQMPLAQKLWFEMLSKGFIPNEHTYNVFMHGCCKSGQFDMAWKL 131
           P    Y  +I+GL + R+   A +++ ++  +G+ P+   Y   + G C  G    A KL
Sbjct: 269 PSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKL 328

Query: 130 WKEMSDRGLRKNKFNYNTMIASFSLGGKLNEACALFEEM 14
           W EM  +GL  N++ YN MI  +       EA  L+++M
Sbjct: 329 WFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDM 367