BLASTX nr result
ID: Coptis25_contig00033218
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00033218
(891 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containi... 121 3e-50
emb|CBI24516.3| unnamed protein product [Vitis vinifera] 121 3e-50
ref|XP_003571953.1| PREDICTED: pentatricopeptide repeat-containi... 105 6e-48
gb|EEC66478.1| hypothetical protein OsI_32564 [Oryza sativa Indi... 102 4e-44
gb|AAL34928.1|AC079037_1 Putative PPR-repeat protein [Oryza sati... 102 2e-43
>ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Vitis vinifera]
Length = 1101
Score = 121 bits (303), Expect(3) = 3e-50
Identities = 60/110 (54%), Positives = 78/110 (70%)
Frame = -2
Query: 779 RPSVAIYDSIIGSLCKEKRLPEGEWIFRRMLEVGAVPDGDLYSTLINDYSINGRAIDACH 600
+PSVAIYDSIIG L + KR+ E E +F+ MLE G PD +Y T+I+ YS N RAI+A
Sbjct: 581 KPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISGYSKNRRAIEARQ 640
Query: 599 LFHVMIERGFRPCAHTYTGLINGLMKKNMTEKACKYLEMVLDDGLVLGTV 450
LF MIE GF+P +H+YT +I+GL+K+NM +K C YL +L DG V TV
Sbjct: 641 LFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPNTV 690
Score = 68.9 bits (167), Expect(3) = 3e-50
Identities = 39/87 (44%), Positives = 53/87 (60%)
Frame = -1
Query: 450 IYSILINQSCKKGEVSFAFRLADLMKRNHIERDLMTFGSLVSGVCSNISRAGRRYHVVDR 271
+Y+ LINQ +KGE+ FAFRL DLM RN IE D++T +LVSGV NI+ RR++ V
Sbjct: 691 LYTSLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRRRWYHVKS 750
Query: 270 RSKKAGEMIFQLLNC*F*CQRSTKEEF 190
S + E++ LL+ F R F
Sbjct: 751 GSARVREILLHLLHQSFVIPRENNLSF 777
Score = 56.6 bits (135), Expect(3) = 3e-50
Identities = 23/39 (58%), Positives = 33/39 (84%)
Frame = -3
Query: 889 GLVPNLATYLVMINEHCKQGDMWMAFEVLEKMDERGLGP 773
G+VP+LATYL+M++EHC GD+ AF +L++M+ERGL P
Sbjct: 544 GIVPDLATYLIMVHEHCNHGDLASAFGLLDQMNERGLKP 582
>emb|CBI24516.3| unnamed protein product [Vitis vinifera]
Length = 970
Score = 121 bits (303), Expect(3) = 3e-50
Identities = 60/110 (54%), Positives = 78/110 (70%)
Frame = -2
Query: 779 RPSVAIYDSIIGSLCKEKRLPEGEWIFRRMLEVGAVPDGDLYSTLINDYSINGRAIDACH 600
+PSVAIYDSIIG L + KR+ E E +F+ MLE G PD +Y T+I+ YS N RAI+A
Sbjct: 461 KPSVAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISGYSKNRRAIEARQ 520
Query: 599 LFHVMIERGFRPCAHTYTGLINGLMKKNMTEKACKYLEMVLDDGLVLGTV 450
LF MIE GF+P +H+YT +I+GL+K+NM +K C YL +L DG V TV
Sbjct: 521 LFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPNTV 570
Score = 68.9 bits (167), Expect(3) = 3e-50
Identities = 39/87 (44%), Positives = 53/87 (60%)
Frame = -1
Query: 450 IYSILINQSCKKGEVSFAFRLADLMKRNHIERDLMTFGSLVSGVCSNISRAGRRYHVVDR 271
+Y+ LINQ +KGE+ FAFRL DLM RN IE D++T +LVSGV NI+ RR++ V
Sbjct: 571 LYTSLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRRRWYHVKS 630
Query: 270 RSKKAGEMIFQLLNC*F*CQRSTKEEF 190
S + E++ LL+ F R F
Sbjct: 631 GSARVREILLHLLHQSFVIPRENNLSF 657
Score = 56.6 bits (135), Expect(3) = 3e-50
Identities = 23/39 (58%), Positives = 33/39 (84%)
Frame = -3
Query: 889 GLVPNLATYLVMINEHCKQGDMWMAFEVLEKMDERGLGP 773
G+VP+LATYL+M++EHC GD+ AF +L++M+ERGL P
Sbjct: 424 GIVPDLATYLIMVHEHCNHGDLASAFGLLDQMNERGLKP 462
>ref|XP_003571953.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Brachypodium distachyon]
Length = 926
Score = 105 bits (261), Expect(4) = 6e-48
Identities = 51/109 (46%), Positives = 68/109 (62%)
Frame = -2
Query: 776 PSVAIYDSIIGSLCKEKRLPEGEWIFRRMLEVGAVPDGDLYSTLINDYSINGRAIDACHL 597
PS+A+YDSII LC+ E E+ R+M+E G VPD +Y+TL+N YS AC +
Sbjct: 497 PSIAVYDSIIACLCRLGHFKEAEFTLRQMIEAGLVPDEVIYTTLLNGYSTMRHTKAACRV 556
Query: 596 FHVMIERGFRPCAHTYTGLINGLMKKNMTEKACKYLEMVLDDGLVLGTV 450
F M+ERG +P +H Y LINGL+K N KA YLE +L++G TV
Sbjct: 557 FDEMLERGLQPGSHAYGALINGLVKDNKIRKALHYLERMLEEGFATQTV 605
Score = 63.9 bits (154), Expect(4) = 6e-48
Identities = 33/73 (45%), Positives = 48/73 (65%)
Frame = -1
Query: 450 IYSILINQSCKKGEVSFAFRLADLMKRNHIERDLMTFGSLVSGVCSNISRAGRRYHVVDR 271
IY++LINQ +KGE L DLM +NH+E DL+T+G+LV+G+C NI R R +
Sbjct: 606 IYTMLINQFFRKGEEWLGLDLVDLMMKNHVEPDLITYGALVTGICRNIDRRDMRPSLA-A 664
Query: 270 RSKKAGEMIFQLL 232
+ +A M+F+LL
Sbjct: 665 KLDEARYMLFRLL 677
Score = 57.4 bits (137), Expect(4) = 6e-48
Identities = 26/70 (37%), Positives = 46/70 (65%)
Frame = -3
Query: 211 EEHKRRISCKFTEEFIYIAEKLMKDITRNGVVFDLHFYNAVINGYCRAHMLRDAYLYVEL 32
++ K+R+S +EE I +A+ +++D+ +G++ DLH YN ++NG CRA + DAY + L
Sbjct: 688 KQKKKRMS---SEEKIDLAQNIIQDLVESGMMPDLHIYNGMLNGLCRAQKMDDAYNLLSL 744
Query: 31 MQNDGLNAKH 2
M+ G+ H
Sbjct: 745 MEQSGVLPNH 754
Score = 32.7 bits (73), Expect(4) = 6e-48
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -3
Query: 889 GLVPNLATYLVMINEHCKQGDMWMAFEVLEKMDERGLGP 773
G+ P+++T +M+ +CK GD+ A + ++M + GL P
Sbjct: 459 GVRPDMSTNSIMVTAYCKIGDIESALSLFDEMAKDGLEP 497
>gb|EEC66478.1| hypothetical protein OsI_32564 [Oryza sativa Indica Group]
Length = 481
Score = 102 bits (253), Expect(3) = 4e-44
Identities = 49/109 (44%), Positives = 70/109 (64%)
Frame = -2
Query: 776 PSVAIYDSIIGSLCKEKRLPEGEWIFRRMLEVGAVPDGDLYSTLINDYSINGRAIDACHL 597
PS+A+YDSII LC+ +RL E E R+M+ G PD +Y++LIN YS+ + + C +
Sbjct: 53 PSIAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDEIIYTSLINGYSLTRQTRNVCRI 112
Query: 596 FHVMIERGFRPCAHTYTGLINGLMKKNMTEKACKYLEMVLDDGLVLGTV 450
F M++RG +P H Y LINGL+K N KA YLE +L++G+ TV
Sbjct: 113 FDEMLKRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTV 161
Score = 63.2 bits (152), Expect(3) = 4e-44
Identities = 31/73 (42%), Positives = 51/73 (69%)
Frame = -1
Query: 450 IYSILINQSCKKGEVSFAFRLADLMKRNHIERDLMTFGSLVSGVCSNISRAGRRYHVVDR 271
IY++LINQ +KG+V L LM + ++ DL+T+G+LV+G+C NI+R G R +D+
Sbjct: 162 IYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVAGICRNIARRGMR-PSLDK 220
Query: 270 RSKKAGEMIFQLL 232
+ K+A M+F++L
Sbjct: 221 KLKEARYMLFRML 233
Score = 60.8 bits (146), Expect(3) = 4e-44
Identities = 26/59 (44%), Positives = 39/59 (66%)
Frame = -3
Query: 178 TEEFIYIAEKLMKDITRNGVVFDLHFYNAVINGYCRAHMLRDAYLYVELMQNDGLNAKH 2
TEE I +A+ +++D+ NG+V DLH YN +ING CRA+ + DAY + +M G+ H
Sbjct: 251 TEEMIQVAQGIIQDLEENGMVPDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNH 309
>gb|AAL34928.1|AC079037_1 Putative PPR-repeat protein [Oryza sativa]
gi|31429883|gb|AAP51872.1| hypothetical protein
LOC_Os10g02650 [Oryza sativa Japonica Group]
Length = 949
Score = 102 bits (253), Expect(3) = 2e-43
Identities = 49/109 (44%), Positives = 70/109 (64%)
Frame = -2
Query: 776 PSVAIYDSIIGSLCKEKRLPEGEWIFRRMLEVGAVPDGDLYSTLINDYSINGRAIDACHL 597
PS+A+YDSII LC+ +RL E E R+M+ G PD +Y++LIN YS+ + + C +
Sbjct: 501 PSIAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDEIIYTSLINGYSLTRQTRNVCRI 560
Query: 596 FHVMIERGFRPCAHTYTGLINGLMKKNMTEKACKYLEMVLDDGLVLGTV 450
F M++RG +P H Y LINGL+K N KA YLE +L++G+ TV
Sbjct: 561 FDEMLKRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTV 609
Score = 60.8 bits (146), Expect(3) = 2e-43
Identities = 30/73 (41%), Positives = 50/73 (68%)
Frame = -1
Query: 450 IYSILINQSCKKGEVSFAFRLADLMKRNHIERDLMTFGSLVSGVCSNISRAGRRYHVVDR 271
IY++LINQ +KG+V L LM + ++ DL+T+G+LV+G+C NI+R G R + +
Sbjct: 610 IYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVTGICRNIARRGMRPSLA-K 668
Query: 270 RSKKAGEMIFQLL 232
+ K+A M+F++L
Sbjct: 669 KLKEARYMLFRML 681
Score = 60.8 bits (146), Expect(3) = 2e-43
Identities = 26/59 (44%), Positives = 39/59 (66%)
Frame = -3
Query: 178 TEEFIYIAEKLMKDITRNGVVFDLHFYNAVINGYCRAHMLRDAYLYVELMQNDGLNAKH 2
TEE I +A+ +++D+ NG+V DLH YN +ING CRA+ + DAY + +M G+ H
Sbjct: 699 TEEMIQVAQGIIQDLEENGMVPDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNH 757