BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033199
         (736 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   353   2e-95
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   353   3e-95
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [...   333   2e-89
gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana]             327   1e-87
ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian...   327   1e-87

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score =  353 bits (906), Expect = 2e-95
 Identities = 181/252 (71%), Positives = 200/252 (79%), Gaps = 7/252 (2%)
 Frame = +2

Query: 2   VVHPAPGNANGTLVNGILHHCALPXXXXXXXXXXXXXXXXAEFTGSHDDRSSSMEIG--- 172
           VVHPAPGNA+GTLVNGILHHC+LP                +E     DD  +S   G   
Sbjct: 162 VVHPAPGNASGTLVNGILHHCSLPTVALPNRD--------SEEDDISDDEFNSFAAGQNC 213

Query: 173 ----SSIRPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIHRVYISLTSGVPTTLS 340
               ++IRPGIVHRLDKGTSGLLVVAKDE+SHAHLSEQFK H+IHRVYISLTSGVPT LS
Sbjct: 214 GTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLS 273

Query: 341 GRVEVPIGRDINNRIRMAAIPCPSVSRQVRHAASRYKVIEVLAGGGSALVEWRLETGRTH 520
           GRVE+P+GRD NNRIRM A+P PS S Q RHAASRYKVIE+LA GGSALVEWRLETGRTH
Sbjct: 274 GRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTH 333

Query: 521 QIRAHAKYLGIPLLGDEVYGGTKSMALSLLQPRISSSHRADLTKLVSMLERPCLHALALG 700
           QIRAHAKYLGIPLLGDEVYGGTK+MALSLL+PRI SSH   L +LVS L+RPCLHA+ALG
Sbjct: 334 QIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALG 393

Query: 701 FKHPHTGERIKF 736
           F HP TG+ + F
Sbjct: 394 FNHPKTGKNVHF 405


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  353 bits (905), Expect = 3e-95
 Identities = 178/245 (72%), Positives = 197/245 (80%)
 Frame = +2

Query: 2    VVHPAPGNANGTLVNGILHHCALPXXXXXXXXXXXXXXXXAEFTGSHDDRSSSMEIGSSI 181
            VVHPAPGNA+GTLVNGILHHC+LP                 EF      ++      ++I
Sbjct: 308  VVHPAPGNASGTLVNGILHHCSLPTVALPNRDSEEDDILDDEFNSFAAGQNCGT-CETNI 366

Query: 182  RPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPI 361
            RPGIVHRLDKGTSGLLVVAKDE+SHAHLSEQFK H+IHRVYISLTSGVPT LSGRVE+P+
Sbjct: 367  RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPV 426

Query: 362  GRDINNRIRMAAIPCPSVSRQVRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAK 541
            GRD NNRIRM A+P PS S Q RHAASRYKVIE+LA GGSALVEWRLETGRTHQIRAHAK
Sbjct: 427  GRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAK 486

Query: 542  YLGIPLLGDEVYGGTKSMALSLLQPRISSSHRADLTKLVSMLERPCLHALALGFKHPHTG 721
            YLGIPLLGDEVYGGTK+MALSLL+PRI SSH   L +LVS L+RPCLHA+ALGF HP TG
Sbjct: 487  YLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTG 546

Query: 722  ERIKF 736
            + + F
Sbjct: 547  KNVHF 551


>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 399

 Score =  333 bits (854), Expect = 2e-89
 Identities = 169/233 (72%), Positives = 189/233 (81%)
 Frame = +2

Query: 2   VVHPAPGNANGTLVNGILHHCALPXXXXXXXXXXXXXXXXAEFTGSHDDRSSSMEIGSSI 181
           VVHPAPGN  GTLVNGILHHC LP                AE     D+RS S    SSI
Sbjct: 157 VVHPAPGNPTGTLVNGILHHCNLPTVAISSQEVLSD----AEDRSDDDERSYSSSCESSI 212

Query: 182 RPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPI 361
           RPGIVHRLDKGTSGLLVVAKDE++HAHLSEQFKQHTI RVYISLTSGVP+ L+GR+++PI
Sbjct: 213 RPGIVHRLDKGTSGLLVVAKDEHAHAHLSEQFKQHTIQRVYISLTSGVPSALTGRIDIPI 272

Query: 362 GRDINNRIRMAAIPCPSVSRQVRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAK 541
           GRD+NNRIRM AIP P    + RHAASR+KV+E LAGGGSALVEWRLETGRTHQIRAHAK
Sbjct: 273 GRDVNNRIRMTAIPGPIKQGRARHAASRFKVVETLAGGGSALVEWRLETGRTHQIRAHAK 332

Query: 542 YLGIPLLGDEVYGGTKSMALSLLQPRISSSHRADLTKLVSMLERPCLHALALG 700
           Y+GIPLLGDEVYGGT+SMALSLL+PRI S+  ++L+ L+S LERPCLHALALG
Sbjct: 333 YIGIPLLGDEVYGGTRSMALSLLRPRIPSTCHSELSLLLSKLERPCLHALALG 385


>gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana]
          Length = 980

 Score =  327 bits (839), Expect = 1e-87
 Identities = 162/245 (66%), Positives = 190/245 (77%)
 Frame = +2

Query: 2    VVHPAPGNANGTLVNGILHHCALPXXXXXXXXXXXXXXXXAEFTGSHDDRSSSMEIGSSI 181
            VVHPAPGN  GTLVNGILHHC+LP                  F+   +  +S     +S+
Sbjct: 717  VVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDDDSDEET-FSDDEEMTTSPSSYAASV 775

Query: 182  RPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPI 361
            RPGIVHRLDKGT+GLLVVAKDE+SHAHL+EQFK HTI RVY+SLT+GVP+   GR+E+PI
Sbjct: 776  RPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPI 835

Query: 362  GRDINNRIRMAAIPCPSVSRQVRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAK 541
            GRD +NRIRMAAIP      + RHAASRYKVIE  AGGGSALVEWRLETGRTHQIRAHAK
Sbjct: 836  GRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAK 895

Query: 542  YLGIPLLGDEVYGGTKSMALSLLQPRISSSHRADLTKLVSMLERPCLHALALGFKHPHTG 721
            Y+G+PLLGDEVYGGTKSMALSLLQ R+S S + ++ +L+S ++RPCLHA+ LGF HP TG
Sbjct: 896  YMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTG 955

Query: 722  ERIKF 736
            E +KF
Sbjct: 956  EIVKF 960


>ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
           gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA
           pseudourine synthase 2, chloroplastic; AltName: Full=RNA
           pseudouridylate synthase 2; AltName: Full=RNA-uridine
           isomerase 2; Flags: Precursor
           gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2
           [Arabidopsis thaliana]
          Length = 430

 Score =  327 bits (839), Expect = 1e-87
 Identities = 162/245 (66%), Positives = 190/245 (77%)
 Frame = +2

Query: 2   VVHPAPGNANGTLVNGILHHCALPXXXXXXXXXXXXXXXXAEFTGSHDDRSSSMEIGSSI 181
           VVHPAPGN  GTLVNGILHHC+LP                  F+   +  +S     +S+
Sbjct: 167 VVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDDDSDEET-FSDDEEMTTSPSSYAASV 225

Query: 182 RPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPI 361
           RPGIVHRLDKGT+GLLVVAKDE+SHAHL+EQFK HTI RVY+SLT+GVP+   GR+E+PI
Sbjct: 226 RPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPI 285

Query: 362 GRDINNRIRMAAIPCPSVSRQVRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAK 541
           GRD +NRIRMAAIP      + RHAASRYKVIE  AGGGSALVEWRLETGRTHQIRAHAK
Sbjct: 286 GRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAK 345

Query: 542 YLGIPLLGDEVYGGTKSMALSLLQPRISSSHRADLTKLVSMLERPCLHALALGFKHPHTG 721
           Y+G+PLLGDEVYGGTKSMALSLLQ R+S S + ++ +L+S ++RPCLHA+ LGF HP TG
Sbjct: 346 YMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTG 405

Query: 722 ERIKF 736
           E +KF
Sbjct: 406 EIVKF 410