BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033175
         (450 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002871218.1| pentatricopeptide repeat-containing protein ...    62   4e-08
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat...    62   4e-08

>ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297317055|gb|EFH47477.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 1029

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
 Frame = +1

Query: 94  SKLRRKEKNQDTQLKKTQKETNEFASIFNKITEIIG-----TEHSNDPDPNCSSTVCRNV 258
           SK  +  K ++T   K Q E     S+FN+IT+I+G     T+ +     + S+ VC N 
Sbjct: 28  SKSSKSNKTRETTPSKIQSEATAITSLFNEITDILGSDVVQTDETTRLRAHVSAPVCDNG 87

Query: 259 KASXXXXXXXXXXXXXXHFANSLV-------IDVSPLVHKITEIVRAENANISMEERLEK 417
                               N          +D SP+VH+IT +VRA++  +SME+RLE 
Sbjct: 88  ALVSCTQGVRENAAMGFSGENEEAQKGLLEKVDFSPVVHQITSVVRADDEIVSMEDRLEI 147

Query: 418 AGFVFDAEIVE 450
             F F+ EIVE
Sbjct: 148 LSFRFEPEIVE 158


>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial-like [Vitis vinifera]
          Length = 1048

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
 Frame = +1

Query: 7   MSYLLKLRSSHSIPQKHFF-----KHQTSFHSKPSKLRRKEKNQDTQLK-KTQKETNEFA 168
           M YL +L S       + F     K Q+   S  SKL +   +++   K +T+ E     
Sbjct: 1   MRYLSRLGSLKPSSTDNLFYLPIRKSQSCLLSSRSKLSKLHPSKNDHNKSQTESEDQSVG 60

Query: 169 SIFNKITEIIGTEH---SNDPDP-------------------NCSSTVCRNVKASXXXXX 282
           S+FN+I EI+G E      +P                     +C+  VC  +        
Sbjct: 61  SLFNEIAEILGAETVTVGRNPAGFSAFKGTQLSVGEITAEYRSCTQGVC-GIAEDNAREM 119

Query: 283 XXXXXXXXXHFANSLVIDVSPLVHKITEIVRAENANISMEERLEKAGFVFDAEIVE 450
                      ++S   DVSP+V +IT+IVRA+    SMEE+LEK+GFVFD+E+VE
Sbjct: 120 VDLSVLEDTQTSHSGGNDVSPMVDEITKIVRADIGTGSMEEKLEKSGFVFDSEVVE 175