BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033032
         (306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20254.3| unnamed protein product [Vitis vinifera]              135   4e-30
ref|XP_002301860.1| predicted protein [Populus trichocarpa] gi|2...   133   2e-29
ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containi...   122   4e-26
ref|NP_172105.4| uncharacterized basic helix-loop-helix protein ...   121   5e-26
sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-c...   121   5e-26

>emb|CBI20254.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  135 bits (339), Expect = 4e-30
 Identities = 62/99 (62%), Positives = 79/99 (79%)
 Frame = -1

Query: 303 VQCCLPIRAMEFYVLMLNDRLCPSSFTFSSLIKACTLVSSLGFGESVQCHIWKNGFGSHV 124
           VQC  P++A++ Y+ M+  ++ P+SFTFSSL+KAC+LVS LGFGE+V  HIWK GF SHV
Sbjct: 86  VQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHV 145

Query: 123 FVQTGLIDFYSNLNKIVECVKVFEEMPDRDVFAWATMLS 7
           FVQT L+DFY N  KIVE  +VF+EM +RDVFAW TM+S
Sbjct: 146 FVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMIS 184


>ref|XP_002301860.1| predicted protein [Populus trichocarpa] gi|222843586|gb|EEE81133.1|
           predicted protein [Populus trichocarpa]
          Length = 933

 Score =  133 bits (334), Expect = 2e-29
 Identities = 61/100 (61%), Positives = 78/100 (78%)
 Frame = -1

Query: 306 FVQCCLPIRAMEFYVLMLNDRLCPSSFTFSSLIKACTLVSSLGFGESVQCHIWKNGFGSH 127
           FVQ   P++A+E YV ML   + P+S+TF SLIKAC LVS L F E+V  H+W+NGF SH
Sbjct: 55  FVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSH 114

Query: 126 VFVQTGLIDFYSNLNKIVECVKVFEEMPDRDVFAWATMLS 7
           VFVQT L+DFYS++ +I E V+VF+EMP+RDVFAW TM+S
Sbjct: 115 VFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVS 154


>ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  122 bits (305), Expect = 4e-26
 Identities = 56/84 (66%), Positives = 68/84 (80%)
 Frame = -1

Query: 258 MLNDRLCPSSFTFSSLIKACTLVSSLGFGESVQCHIWKNGFGSHVFVQTGLIDFYSNLNK 79
           M+  ++ P+SFTFSSL+KAC+LVS LGFGE+V  HIWK GF SHVFVQT L+DFY N  K
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 78  IVECVKVFEEMPDRDVFAWATMLS 7
           IVE  +VF+EM +RDVFAW TM+S
Sbjct: 61  IVEARRVFDEMSERDVFAWTTMIS 84


>ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
            gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity
            to an unknown protein T5J8.5 gi|4263522 from Arabidopsis
            thaliana BAC T5J8 gb|AC004044 and contains multiple PPR
            PF|01535 repeats. ESTs gb|AV565358, gb|AV558710,
            gb|AV524184 come from this gene [Arabidopsis thaliana]
            gi|332189826|gb|AEE27947.1| uncharacterized basic
            helix-loop-helix protein [Arabidopsis thaliana]
          Length = 1322

 Score =  121 bits (304), Expect = 5e-26
 Identities = 60/102 (58%), Positives = 74/102 (72%)
 Frame = -1

Query: 306  FVQCCLPIRAMEFYVLMLNDRLCPSSFTFSSLIKACTLVSSLGFGESVQCHIWKNGFGSH 127
            FV C  PIR++E YV ML D + PSS+T+SSL+KA +  S   FGES+Q HIWK GFG H
Sbjct: 846  FVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASR--FGESLQAHIWKFGFGFH 903

Query: 126  VFVQTGLIDFYSNLNKIVECVKVFEEMPDRDVFAWATMLSSY 1
            V +QT LIDFYS   +I E  KVF+EMP+RD  AW TM+S+Y
Sbjct: 904  VKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAY 945



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/90 (26%), Positives = 48/90 (53%)
 Frame = -1

Query: 279  AMEFYVLMLNDRLCPSSFTFSSLIKACTLVSSLGFGESVQCHIWKNGFGSHVFVQTGLID 100
            A+  +  M+ + + P   T S++I AC  +  L  G+ V  +  +NGF   V++ + L+D
Sbjct: 1016 AIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVD 1075

Query: 99   FYSNLNKIVECVKVFEEMPDRDVFAWATML 10
             YS    +   + VF  +P +++F W +++
Sbjct: 1076 MYSKCGSLERALLVFFNLPKKNLFCWNSII 1105


>sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
          Length = 577

 Score =  121 bits (304), Expect = 5e-26
 Identities = 60/102 (58%), Positives = 74/102 (72%)
 Frame = -1

Query: 306 FVQCCLPIRAMEFYVLMLNDRLCPSSFTFSSLIKACTLVSSLGFGESVQCHIWKNGFGSH 127
           FV C  PIR++E YV ML D + PSS+T+SSL+KA +  S   FGES+Q HIWK GFG H
Sbjct: 101 FVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASR--FGESLQAHIWKFGFGFH 158

Query: 126 VFVQTGLIDFYSNLNKIVECVKVFEEMPDRDVFAWATMLSSY 1
           V +QT LIDFYS   +I E  KVF+EMP+RD  AW TM+S+Y
Sbjct: 159 VKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAY 200



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/90 (26%), Positives = 48/90 (53%)
 Frame = -1

Query: 279 AMEFYVLMLNDRLCPSSFTFSSLIKACTLVSSLGFGESVQCHIWKNGFGSHVFVQTGLID 100
           A+  +  M+ + + P   T S++I AC  +  L  G+ V  +  +NGF   V++ + L+D
Sbjct: 271 AIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVD 330

Query: 99  FYSNLNKIVECVKVFEEMPDRDVFAWATML 10
            YS    +   + VF  +P +++F W +++
Sbjct: 331 MYSKCGSLERALLVFFNLPKKNLFCWNSII 360