BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00033007
         (398 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15
ref|XP_002510717.1| pentatricopeptide repeat-containing protein,...    80   2e-13
emb|CBI40755.3| unnamed protein product [Vitis vinifera]               70   2e-10
ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containi...    69   5e-10
ref|XP_003534689.1| PREDICTED: pentatricopeptide repeat-containi...    67   2e-09

>ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 767

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = -2

Query: 253 IEVPNVFNWNTMISGLADSVRMKKA-RLFDEMGARDCVTWNSMMSGYF*NGKSGDRL*MC 77
           I  PNV++WNTMISG ADS +M++A +LF++M  RD V+WNSMMSGYF NG+    +   
Sbjct: 55  IMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATI-KV 113

Query: 76  LFLMMWDFSCELDPFSLSCVLKACG 2
              M+ D  C  DPFS SCV+KA G
Sbjct: 114 FVSMVRDCCCVPDPFSFSCVMKASG 138


>ref|XP_002510717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551418|gb|EEF52904.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 742

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 41/81 (50%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
 Frame = -2

Query: 241 NVFNWNTMISGLADSVRMKKAR-LFDEMGARDCVTWNSMMSGYF*NGKSGDRL*MCLFLM 65
           NVF++NTMI+GL+ + ++ KA+ +FDEM  RD V+WNSMMSGYF NGK  + +     LM
Sbjct: 56  NVFSYNTMITGLSKAEQIDKAKKVFDEMPERDSVSWNSMMSGYFRNGKY-EEVVKVFVLM 114

Query: 64  MWDFSCELDPFSLSCVLKACG 2
           + +F+C ++  S SC +KACG
Sbjct: 115 IRNFTCIVNLLSFSCAMKACG 135


>emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 33/52 (63%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
 Frame = -2

Query: 253 IEVPNVFNWNTMISGLADSVRMKKA-RLFDEMGARDCVTWNSMMSGYF*NGK 101
           I  PNV++WNTMISG ADS +M++A +LF++M  RD V+WNSMMSGYF NG+
Sbjct: 65  IMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGE 116


>ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 921

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
 Frame = -2

Query: 370 LSVINLSIFFLCQTLSL-STAPFTPHCFAVY*LI*TQSEEIEVPNVFNWNTMISGLADSV 194
           LS ++ S+F L   L + S        F V+        E    N+F WNTM+    DS 
Sbjct: 32  LSGLDASLFLLNNLLHVYSNCGMVDDAFRVF-------REANHANIFTWNTMLHAFFDSG 84

Query: 193 RMKKA-RLFDEMG--ARDCVTWNSMMSGYF*NGKSGDRL*MCLFLMMWDFSCEL---DPF 32
           RM++A  LFDEM    RD V+W +M+SGY  NG  G  +      M+ D + ++   DPF
Sbjct: 85  RMREAENLFDEMPLIVRDSVSWTTMISGYCQNGLPGHSI-KTFMSMLRDSNHDIQNCDPF 143

Query: 31  SLSCVLKACG 2
           S +C +KACG
Sbjct: 144 SYTCTMKACG 153


>ref|XP_003534689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 948

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
 Frame = -2

Query: 370 LSVINLSIFFLCQTLSL-STAPFTPHCFAVY*LI*TQSEEIEVPNVFNWNTMISGLADSV 194
           LS ++ S+F L   L + S        F V+        E    N+F WNTM+    DS 
Sbjct: 32  LSGLDASLFLLNNLLHMYSNCGMVDDAFCVF-------REANHANIFTWNTMLHAFFDSG 84

Query: 193 RMKKA-RLFDEMG--ARDCVTWNSMMSGYF*NGKSGDRL*MCLFLMMWDFSCEL---DPF 32
           RM++A  LFDEM    RD V+W +M+SGY  NG     +      M+ D + ++   DPF
Sbjct: 85  RMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSI-KTFMSMLRDSNHDIQNCDPF 143

Query: 31  SLSCVLKACG 2
           S +C +KACG
Sbjct: 144 SYTCTMKACG 153