BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032997
         (365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...    78   9e-30
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...    80   5e-28
emb|CBI26820.3| unnamed protein product [Vitis vinifera]               80   5e-28
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]    80   5e-28
ref|XP_002311535.1| rna-dependent RNA polymerase [Populus tricho...    82   8e-28

>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score = 78.2 bits (191), Expect(2) = 9e-30
 Identities = 40/66 (60%), Positives = 46/66 (69%)
 Frame = -3

Query: 363  DKESTMVESPECIQLAKLFSIAVDFP*TGVPAVITPHLHVTECPDFMEKLDKQTYVSQRV 184
            DKES    S  C++LA+ FSIAVDFP TGVPA I  +L   E PDFMEK DK +Y S+ V
Sbjct: 881  DKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNV 940

Query: 183  IGNLFR 166
            IG LFR
Sbjct: 941  IGKLFR 946



 Score = 77.0 bits (188), Expect(2) = 9e-30
 Identities = 33/53 (62%), Positives = 44/53 (83%)
 Frame = -2

Query: 160  KMLAPQTSCLRSFTGEVAKRSFVPDMEVDGFENFLDDTQYYKGEYDFKLGNLM 2
            K +AP+TS +RSFT +VA++ + PDMEVDGFE+++DD  YYK  YD+KLGNLM
Sbjct: 949  KDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLM 1001


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 80.5 bits (197), Expect(2) = 5e-28
 Identities = 43/66 (65%), Positives = 45/66 (68%)
 Frame = -3

Query: 363  DKESTMVESPECIQLAKLFSIAVDFP*TGVPAVITPHLHVTECPDFMEKLDKQTYVSQRV 184
            DKE        C +LAKLFSIAVDFP TGVPA I  +L V E PDFMEK DK TY SQ V
Sbjct: 871  DKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSV 930

Query: 183  IGNLFR 166
            IG LFR
Sbjct: 931  IGKLFR 936



 Score = 68.9 bits (167), Expect(2) = 5e-28
 Identities = 31/53 (58%), Positives = 41/53 (77%)
 Frame = -2

Query: 160  KMLAPQTSCLRSFTGEVAKRSFVPDMEVDGFENFLDDTQYYKGEYDFKLGNLM 2
            K +AP    +RSFT +VA++S+ PDMEV GFE+++ D  YYK EYD+KLGNLM
Sbjct: 939  KDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLM 991


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score = 80.5 bits (197), Expect(2) = 5e-28
 Identities = 43/66 (65%), Positives = 45/66 (68%)
 Frame = -3

Query: 363 DKESTMVESPECIQLAKLFSIAVDFP*TGVPAVITPHLHVTECPDFMEKLDKQTYVSQRV 184
           DKE        C +LAKLFSIAVDFP TGVPA I  +L V E PDFMEK DK TY SQ V
Sbjct: 669 DKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSV 728

Query: 183 IGNLFR 166
           IG LFR
Sbjct: 729 IGKLFR 734



 Score = 68.9 bits (167), Expect(2) = 5e-28
 Identities = 31/53 (58%), Positives = 41/53 (77%)
 Frame = -2

Query: 160 KMLAPQTSCLRSFTGEVAKRSFVPDMEVDGFENFLDDTQYYKGEYDFKLGNLM 2
           K +AP    +RSFT +VA++S+ PDMEV GFE+++ D  YYK EYD+KLGNLM
Sbjct: 737 KDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLM 789


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score = 80.5 bits (197), Expect(2) = 5e-28
 Identities = 43/66 (65%), Positives = 45/66 (68%)
 Frame = -3

Query: 363 DKESTMVESPECIQLAKLFSIAVDFP*TGVPAVITPHLHVTECPDFMEKLDKQTYVSQRV 184
           DKE        C +LAKLFSIAVDFP TGVPA I  +L V E PDFMEK DK TY SQ V
Sbjct: 404 DKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSV 463

Query: 183 IGNLFR 166
           IG LFR
Sbjct: 464 IGKLFR 469



 Score = 68.9 bits (167), Expect(2) = 5e-28
 Identities = 31/53 (58%), Positives = 41/53 (77%)
 Frame = -2

Query: 160 KMLAPQTSCLRSFTGEVAKRSFVPDMEVDGFENFLDDTQYYKGEYDFKLGNLM 2
           K +AP    +RSFT +VA++S+ PDMEV GFE+++ D  YYK EYD+KLGNLM
Sbjct: 472 KDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLM 524


>ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1139

 Score = 81.6 bits (200), Expect(2) = 8e-28
 Identities = 44/70 (62%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
 Frame = -3

Query: 363  DKESTMVESPECIQLAKLFSIAVDFP*TGVPAVITPHLHVTECPDFMEK-LDKQTYVSQR 187
            D++  M  S ECI+LA+L SIAVDFP TGVPA I   L V E PDFMEK  DK+TY SQR
Sbjct: 890  DRDPLMARSKECIELARLSSIAVDFPKTGVPAKIPRELRVKEYPDFMEKAADKRTYESQR 949

Query: 186  VIGNLFRGQR 157
            V+G LFR  R
Sbjct: 950  VLGKLFRDVR 959



 Score = 67.0 bits (162), Expect(2) = 8e-28
 Identities = 30/51 (58%), Positives = 40/51 (78%)
 Frame = -2

Query: 154  LAPQTSCLRSFTGEVAKRSFVPDMEVDGFENFLDDTQYYKGEYDFKLGNLM 2
            +AP TS +RSFT E+A+RS+ PDMEVDGF+  +D+  +YK  YD KLGN+M
Sbjct: 961  IAPDTSPVRSFTKEMARRSYDPDMEVDGFQKHIDEAFHYKSVYDNKLGNMM 1011