BLASTX nr result
ID: Coptis25_contig00032990
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00032990 (549 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI15412.3| unnamed protein product [Vitis vinifera] 306 1e-81 ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [... 296 1e-78 ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-... 296 2e-78 ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|2... 295 4e-78 ref|XP_004138226.1| PREDICTED: DNA mismatch repair protein MSH2-... 286 2e-75 >emb|CBI15412.3| unnamed protein product [Vitis vinifera] Length = 945 Score = 306 bits (785), Expect = 1e-81 Identities = 151/180 (83%), Positives = 162/180 (90%) Frame = -3 Query: 541 EDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYHTT 362 +D +KLPELKLDAKQAQGF+S FKTLP+DPRAVRFFDRRDYYTAHGENATFIAKTYYHTT Sbjct: 6 QDHSKLPELKLDAKQAQGFLSFFKTLPRDPRAVRFFDRRDYYTAHGENATFIAKTYYHTT 65 Query: 361 TALRQLXXXXXXXXXXXXSKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPGNL 182 TALRQL SKNMFETIAR+LLLERTDHTLELYEGSGSNWRL KSGTPGNL Sbjct: 66 TALRQLGSGSDGISSVSVSKNMFETIARNLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 125 Query: 181 GSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTNVE 2 GSFED+LFANNEMQDSPV+VAL P FREN CT+GLGF+DLT+RV+GLAEFLDDSQFTNVE Sbjct: 126 GSFEDVLFANNEMQDSPVIVALFPNFRENGCTVGLGFVDLTRRVLGLAEFLDDSQFTNVE 185 >ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis] gi|223549157|gb|EEF50646.1| DNA mismatch repair protein MSH2, putative [Ricinus communis] Length = 936 Score = 296 bits (759), Expect = 1e-78 Identities = 145/181 (80%), Positives = 158/181 (87%) Frame = -3 Query: 544 LEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYHT 365 +++ NKLPELKLDAKQAQGF+S FKTLP DPRAVR FDRRDYYT+HGENATFIAKTYYHT Sbjct: 1 MDEDNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTSHGENATFIAKTYYHT 60 Query: 364 TTALRQLXXXXXXXXXXXXSKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPGN 185 TTALRQL SKNMFETIARDLLLERTDHTLELYEGSGSNWRL KSGTPGN Sbjct: 61 TTALRQLGSGPDGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGN 120 Query: 184 LGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTNV 5 LGSFED+LFANNEMQDSP V A+ P FREN C+IGLG++DLTKR++GLAEFLDDS FTN+ Sbjct: 121 LGSFEDVLFANNEMQDSPAVAAVIPNFRENGCSIGLGYVDLTKRILGLAEFLDDSHFTNL 180 Query: 4 E 2 E Sbjct: 181 E 181 >ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-like [Glycine max] Length = 942 Score = 296 bits (757), Expect = 2e-78 Identities = 148/183 (80%), Positives = 160/183 (87%), Gaps = 1/183 (0%) Frame = -3 Query: 547 NLED-QNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYY 371 N +D NKLPELKLD+KQAQGF+S FKTLP DPRAVRFFDRRDYYTAHGENATFIAKTYY Sbjct: 4 NFDDLNNKLPELKLDSKQAQGFLSFFKTLPDDPRAVRFFDRRDYYTAHGENATFIAKTYY 63 Query: 370 HTTTALRQLXXXXXXXXXXXXSKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTP 191 HTTTA+RQL S+NMFETIARDLLLERTDHTLELYEGSGSNWRL KSGTP Sbjct: 64 HTTTAMRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTP 123 Query: 190 GNLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFT 11 GN+GSFED+LFAN+EMQDSPVVVAL +REN CTIGLGF+DLTKRV+G+AEFLDDS FT Sbjct: 124 GNIGSFEDVLFANSEMQDSPVVVALSLNYRENGCTIGLGFVDLTKRVLGMAEFLDDSHFT 183 Query: 10 NVE 2 NVE Sbjct: 184 NVE 186 >ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|222858604|gb|EEE96151.1| predicted protein [Populus trichocarpa] Length = 944 Score = 295 bits (754), Expect = 4e-78 Identities = 147/182 (80%), Positives = 156/182 (85%) Frame = -3 Query: 547 NLEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYH 368 N E+QNKLPELKLDAKQAQGF+S FKTLP DPRAVR FDRRDYYT H ENATFIAKTYYH Sbjct: 6 NFEEQNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTVHAENATFIAKTYYH 65 Query: 367 TTTALRQLXXXXXXXXXXXXSKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPG 188 TTTALRQL SKNMFETIARDLLLERTDHTLELYEGSGSNW+L KSGTPG Sbjct: 66 TTTALRQLGSGSNGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWKLVKSGTPG 125 Query: 187 NLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTN 8 NLGSFED+LFANN+MQDSPVVVAL FRE CT+GL ++DLTKRV+GLAEFLDDS FTN Sbjct: 126 NLGSFEDVLFANNDMQDSPVVVALLLNFREKGCTVGLSYVDLTKRVLGLAEFLDDSHFTN 185 Query: 7 VE 2 VE Sbjct: 186 VE 187 >ref|XP_004138226.1| PREDICTED: DNA mismatch repair protein MSH2-like [Cucumis sativus] gi|449477104|ref|XP_004154930.1| PREDICTED: DNA mismatch repair protein MSH2-like [Cucumis sativus] Length = 938 Score = 286 bits (731), Expect = 2e-75 Identities = 138/182 (75%), Positives = 156/182 (85%) Frame = -3 Query: 547 NLEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYH 368 N+++Q KLPELKLDAKQAQGF++ FKTLP D RAVRFFDRRDYYTAH +NA FIAKTYY Sbjct: 4 NVDEQTKLPELKLDAKQAQGFLAFFKTLPPDSRAVRFFDRRDYYTAHSDNAVFIAKTYYR 63 Query: 367 TTTALRQLXXXXXXXXXXXXSKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPG 188 TTTALRQL SKNMFE+IARDLLLERTDHTLELYEGSGSNWRL KSG+PG Sbjct: 64 TTTALRQLGNASEALSSVSVSKNMFESIARDLLLERTDHTLELYEGSGSNWRLIKSGSPG 123 Query: 187 NLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTN 8 N+GSFED+LFANNEMQDSP +VAL P FR+N C +GLG++DLTKRV+G+AEF+DDS FTN Sbjct: 124 NIGSFEDVLFANNEMQDSPAIVALFPYFRDNGCIVGLGYVDLTKRVMGMAEFIDDSHFTN 183 Query: 7 VE 2 VE Sbjct: 184 VE 185