BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032990
         (549 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15412.3| unnamed protein product [Vitis vinifera]              306   1e-81
ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [...   296   1e-78
ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-...   296   2e-78
ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|2...   295   4e-78
ref|XP_004138226.1| PREDICTED: DNA mismatch repair protein MSH2-...   286   2e-75

>emb|CBI15412.3| unnamed protein product [Vitis vinifera]
          Length = 945

 Score =  306 bits (785), Expect = 1e-81
 Identities = 151/180 (83%), Positives = 162/180 (90%)
 Frame = -3

Query: 541 EDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYHTT 362
           +D +KLPELKLDAKQAQGF+S FKTLP+DPRAVRFFDRRDYYTAHGENATFIAKTYYHTT
Sbjct: 6   QDHSKLPELKLDAKQAQGFLSFFKTLPRDPRAVRFFDRRDYYTAHGENATFIAKTYYHTT 65

Query: 361 TALRQLXXXXXXXXXXXXSKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPGNL 182
           TALRQL            SKNMFETIAR+LLLERTDHTLELYEGSGSNWRL KSGTPGNL
Sbjct: 66  TALRQLGSGSDGISSVSVSKNMFETIARNLLLERTDHTLELYEGSGSNWRLVKSGTPGNL 125

Query: 181 GSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTNVE 2
           GSFED+LFANNEMQDSPV+VAL P FREN CT+GLGF+DLT+RV+GLAEFLDDSQFTNVE
Sbjct: 126 GSFEDVLFANNEMQDSPVIVALFPNFRENGCTVGLGFVDLTRRVLGLAEFLDDSQFTNVE 185


>ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis]
           gi|223549157|gb|EEF50646.1| DNA mismatch repair protein
           MSH2, putative [Ricinus communis]
          Length = 936

 Score =  296 bits (759), Expect = 1e-78
 Identities = 145/181 (80%), Positives = 158/181 (87%)
 Frame = -3

Query: 544 LEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYHT 365
           +++ NKLPELKLDAKQAQGF+S FKTLP DPRAVR FDRRDYYT+HGENATFIAKTYYHT
Sbjct: 1   MDEDNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTSHGENATFIAKTYYHT 60

Query: 364 TTALRQLXXXXXXXXXXXXSKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPGN 185
           TTALRQL            SKNMFETIARDLLLERTDHTLELYEGSGSNWRL KSGTPGN
Sbjct: 61  TTALRQLGSGPDGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGN 120

Query: 184 LGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTNV 5
           LGSFED+LFANNEMQDSP V A+ P FREN C+IGLG++DLTKR++GLAEFLDDS FTN+
Sbjct: 121 LGSFEDVLFANNEMQDSPAVAAVIPNFRENGCSIGLGYVDLTKRILGLAEFLDDSHFTNL 180

Query: 4   E 2
           E
Sbjct: 181 E 181


>ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-like [Glycine max]
          Length = 942

 Score =  296 bits (757), Expect = 2e-78
 Identities = 148/183 (80%), Positives = 160/183 (87%), Gaps = 1/183 (0%)
 Frame = -3

Query: 547 NLED-QNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYY 371
           N +D  NKLPELKLD+KQAQGF+S FKTLP DPRAVRFFDRRDYYTAHGENATFIAKTYY
Sbjct: 4   NFDDLNNKLPELKLDSKQAQGFLSFFKTLPDDPRAVRFFDRRDYYTAHGENATFIAKTYY 63

Query: 370 HTTTALRQLXXXXXXXXXXXXSKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTP 191
           HTTTA+RQL            S+NMFETIARDLLLERTDHTLELYEGSGSNWRL KSGTP
Sbjct: 64  HTTTAMRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTP 123

Query: 190 GNLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFT 11
           GN+GSFED+LFAN+EMQDSPVVVAL   +REN CTIGLGF+DLTKRV+G+AEFLDDS FT
Sbjct: 124 GNIGSFEDVLFANSEMQDSPVVVALSLNYRENGCTIGLGFVDLTKRVLGMAEFLDDSHFT 183

Query: 10  NVE 2
           NVE
Sbjct: 184 NVE 186


>ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|222858604|gb|EEE96151.1|
           predicted protein [Populus trichocarpa]
          Length = 944

 Score =  295 bits (754), Expect = 4e-78
 Identities = 147/182 (80%), Positives = 156/182 (85%)
 Frame = -3

Query: 547 NLEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYH 368
           N E+QNKLPELKLDAKQAQGF+S FKTLP DPRAVR FDRRDYYT H ENATFIAKTYYH
Sbjct: 6   NFEEQNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTVHAENATFIAKTYYH 65

Query: 367 TTTALRQLXXXXXXXXXXXXSKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPG 188
           TTTALRQL            SKNMFETIARDLLLERTDHTLELYEGSGSNW+L KSGTPG
Sbjct: 66  TTTALRQLGSGSNGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWKLVKSGTPG 125

Query: 187 NLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTN 8
           NLGSFED+LFANN+MQDSPVVVAL   FRE  CT+GL ++DLTKRV+GLAEFLDDS FTN
Sbjct: 126 NLGSFEDVLFANNDMQDSPVVVALLLNFREKGCTVGLSYVDLTKRVLGLAEFLDDSHFTN 185

Query: 7   VE 2
           VE
Sbjct: 186 VE 187


>ref|XP_004138226.1| PREDICTED: DNA mismatch repair protein MSH2-like [Cucumis sativus]
           gi|449477104|ref|XP_004154930.1| PREDICTED: DNA mismatch
           repair protein MSH2-like [Cucumis sativus]
          Length = 938

 Score =  286 bits (731), Expect = 2e-75
 Identities = 138/182 (75%), Positives = 156/182 (85%)
 Frame = -3

Query: 547 NLEDQNKLPELKLDAKQAQGFISSFKTLPKDPRAVRFFDRRDYYTAHGENATFIAKTYYH 368
           N+++Q KLPELKLDAKQAQGF++ FKTLP D RAVRFFDRRDYYTAH +NA FIAKTYY 
Sbjct: 4   NVDEQTKLPELKLDAKQAQGFLAFFKTLPPDSRAVRFFDRRDYYTAHSDNAVFIAKTYYR 63

Query: 367 TTTALRQLXXXXXXXXXXXXSKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKSGTPG 188
           TTTALRQL            SKNMFE+IARDLLLERTDHTLELYEGSGSNWRL KSG+PG
Sbjct: 64  TTTALRQLGNASEALSSVSVSKNMFESIARDLLLERTDHTLELYEGSGSNWRLIKSGSPG 123

Query: 187 NLGSFEDILFANNEMQDSPVVVALCPLFRENECTIGLGFLDLTKRVVGLAEFLDDSQFTN 8
           N+GSFED+LFANNEMQDSP +VAL P FR+N C +GLG++DLTKRV+G+AEF+DDS FTN
Sbjct: 124 NIGSFEDVLFANNEMQDSPAIVALFPYFRDNGCIVGLGYVDLTKRVMGMAEFIDDSHFTN 183

Query: 7   VE 2
           VE
Sbjct: 184 VE 185