BLASTX nr result
ID: Coptis25_contig00032974
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00032974 (469 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABA95230.1| retrotransposon protein, putative, unclassified [... 137 9e-45 emb|CAE05707.2| OSJNBb0065J09.3 [Oryza sativa Japonica Group] 132 5e-44 emb|CAH67874.1| OSIGBa0153E02-OSIGBa0093I20.3 [Oryza sativa Indi... 132 5e-44 emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa Japonica Group] 134 9e-44 gb|AAM91874.1| putative copia-like polyprotein [Oryza sativa Jap... 136 2e-43 >gb|ABA95230.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 936 Score = 137 bits (344), Expect(2) = 9e-45 Identities = 65/99 (65%), Positives = 78/99 (78%) Frame = -2 Query: 297 GRLIYLTNTRPDIAFAVSVVSQFMHAPRSTHMDAVDRILRYLKSSPGLGLFYPSYGPPDL 118 GRLIYL +TRPDI +AVSVVS++MH PRS HMD V RILRYLK+SPG G+++ G D+ Sbjct: 719 GRLIYLCHTRPDITYAVSVVSRYMHDPRSGHMDVVYRILRYLKASPGKGIWFKKNGHLDV 778 Query: 117 VSYSDADYAGCLTDRRSTSGFCTFYGGCLVSWKSKKQNV 1 Y DAD+ CL DRRSTSG+C F GG LVSW+SKKQ+V Sbjct: 779 EGYCDADWGSCLDDRRSTSGYCVFIGGNLVSWRSKKQSV 817 Score = 68.6 bits (166), Expect(2) = 9e-45 Identities = 35/57 (61%), Positives = 43/57 (75%) Frame = -3 Query: 467 RSRHGISLSQRKYTLDLLFDTGMMGCRPSRTPMDPNHRLHADIGDILPDPGPYQRLV 297 RS GI LSQRKY LDLL DTGM+GCRP+ TP++ NH+L A+ GD + + YQRLV Sbjct: 663 RSPRGIVLSQRKYVLDLLSDTGMLGCRPASTPIEQNHKLCAESGDPV-NKERYQRLV 718 >emb|CAE05707.2| OSJNBb0065J09.3 [Oryza sativa Japonica Group] Length = 1015 Score = 132 bits (333), Expect(2) = 5e-44 Identities = 66/99 (66%), Positives = 76/99 (76%) Frame = -2 Query: 297 GRLIYLTNTRPDIAFAVSVVSQFMHAPRSTHMDAVDRILRYLKSSPGLGLFYPSYGPPDL 118 GRLIYL +TRPDI +AVSVVS++MH PRS HMDAV RILRYLK SPG GL++ G + Sbjct: 780 GRLIYLCHTRPDITYAVSVVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLGV 839 Query: 117 VSYSDADYAGCLTDRRSTSGFCTFYGGCLVSWKSKKQNV 1 Y DAD+A L DRRSTSG+C F GG LVSW+SKKQ V Sbjct: 840 EGYCDADWASSLDDRRSTSGYCVFVGGNLVSWRSKKQPV 878 Score = 70.1 bits (170), Expect(2) = 5e-44 Identities = 35/57 (61%), Positives = 44/57 (77%) Frame = -3 Query: 467 RSRHGISLSQRKYTLDLLFDTGMMGCRPSRTPMDPNHRLHADIGDILPDPGPYQRLV 297 RS GI LSQRKY LDLL DTGM+GCRP+ TP++ NH+L A++GD + + YQRLV Sbjct: 724 RSPRGIVLSQRKYVLDLLCDTGMLGCRPASTPIEQNHKLCAELGDPV-NKERYQRLV 779 >emb|CAH67874.1| OSIGBa0153E02-OSIGBa0093I20.3 [Oryza sativa Indica Group] Length = 806 Score = 132 bits (333), Expect(2) = 5e-44 Identities = 66/99 (66%), Positives = 76/99 (76%) Frame = -2 Query: 297 GRLIYLTNTRPDIAFAVSVVSQFMHAPRSTHMDAVDRILRYLKSSPGLGLFYPSYGPPDL 118 GRLIYL +TRPDI +AVSVVS++MH PRS HMDAV RILRYLK SPG GL++ G + Sbjct: 589 GRLIYLCHTRPDITYAVSVVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLGV 648 Query: 117 VSYSDADYAGCLTDRRSTSGFCTFYGGCLVSWKSKKQNV 1 Y DAD+A L DRRSTSG+C F GG LVSW+SKKQ V Sbjct: 649 EGYCDADWASSLDDRRSTSGYCVFVGGNLVSWRSKKQPV 687 Score = 70.1 bits (170), Expect(2) = 5e-44 Identities = 35/57 (61%), Positives = 44/57 (77%) Frame = -3 Query: 467 RSRHGISLSQRKYTLDLLFDTGMMGCRPSRTPMDPNHRLHADIGDILPDPGPYQRLV 297 RS GI LSQRKY LDLL DTGM+GCRP+ TP++ NH+L A++GD + + YQRLV Sbjct: 533 RSPRGIVLSQRKYVLDLLCDTGMLGCRPASTPIEQNHKLCAELGDPV-NKERYQRLV 588 >emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa Japonica Group] Length = 1262 Score = 134 bits (336), Expect(2) = 9e-44 Identities = 65/99 (65%), Positives = 77/99 (77%) Frame = -2 Query: 297 GRLIYLTNTRPDIAFAVSVVSQFMHAPRSTHMDAVDRILRYLKSSPGLGLFYPSYGPPDL 118 GRLIYL +TRPDI +AVS+VS++MH PRS HMDAV RILRYLK SPG GL++ G ++ Sbjct: 1045 GRLIYLCHTRPDITYAVSMVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLEV 1104 Query: 117 VSYSDADYAGCLTDRRSTSGFCTFYGGCLVSWKSKKQNV 1 Y DAD+A C DRRSTSG+C F GG LVSW+SKKQ V Sbjct: 1105 EGYCDADWASCPDDRRSTSGYCVFVGGNLVSWRSKKQPV 1143 Score = 68.2 bits (165), Expect(2) = 9e-44 Identities = 35/57 (61%), Positives = 43/57 (75%) Frame = -3 Query: 467 RSRHGISLSQRKYTLDLLFDTGMMGCRPSRTPMDPNHRLHADIGDILPDPGPYQRLV 297 RS GI LSQRKY LDLL DTGM+GCRP+ TP+D NH+L A+ G+ + + YQRLV Sbjct: 989 RSPRGIVLSQRKYALDLLSDTGMLGCRPASTPVDQNHKLCAESGNPV-NKERYQRLV 1044 >gb|AAM91874.1| putative copia-like polyprotein [Oryza sativa Japonica Group] Length = 894 Score = 136 bits (342), Expect(2) = 2e-43 Identities = 64/99 (64%), Positives = 78/99 (78%) Frame = -2 Query: 297 GRLIYLTNTRPDIAFAVSVVSQFMHAPRSTHMDAVDRILRYLKSSPGLGLFYPSYGPPDL 118 GRLIYL +TRPDI +AVSVVS++MH PRS HMD V RILRYLK+SPG G+++ G D+ Sbjct: 677 GRLIYLCHTRPDITYAVSVVSRYMHDPRSGHMDVVYRILRYLKASPGKGIWFKKNGHLDM 736 Query: 117 VSYSDADYAGCLTDRRSTSGFCTFYGGCLVSWKSKKQNV 1 Y DAD+ CL DRRSTSG+C F GG LVSW+SKK++V Sbjct: 737 EGYCDADWGSCLDDRRSTSGYCVFIGGNLVSWRSKKESV 775 Score = 64.7 bits (156), Expect(2) = 2e-43 Identities = 34/57 (59%), Positives = 42/57 (73%) Frame = -3 Query: 467 RSRHGISLSQRKYTLDLLFDTGMMGCRPSRTPMDPNHRLHADIGDILPDPGPYQRLV 297 RS GI LSQRKY LDLL DTGM+GCRP+ T ++ NH+L A+ GD + + YQRLV Sbjct: 621 RSPRGIVLSQRKYVLDLLSDTGMLGCRPASTLIEQNHKLCAESGDPV-NKERYQRLV 676