BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032932
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...   102   4e-20
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    96   4e-18
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    89   5e-16
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    81   8e-14
ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containi...    73   3e-11

>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score =  102 bits (253), Expect = 4e-20
 Identities = 47/112 (41%), Positives = 76/112 (67%)
 Frame = +1

Query: 1   ALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEDCDIDEDTYSTVL 180
           A DFF WVC RNGFKPS  +YSLML +L  K+++  FW  +++M ++    DE+TY T+L
Sbjct: 109 AWDFFNWVCDRNGFKPSSPLYSLMLRILVKKDSMKNFWITLRKMKEQGFYTDEETYLTIL 168

Query: 181 GNFKAAKMINDANALNEYFTKVTRDSASNAIVKSVVQVVLKSDCDDNVKKKL 336
           G F+  +M +DA A   +F ++  ++A +++VK+VV VV  ++  + V+K+L
Sbjct: 169 GVFRKERMDSDAVAFKHFFDRMVEENAMDSVVKNVVSVVSATEWSNEVEKEL 220


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 45/114 (39%), Positives = 75/114 (65%)
 Frame = +1

Query: 7   DFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEDCDIDEDTYSTVLGN 186
           +FF WV  +NGF+PS  +YSL+L  L   E++ +FW  +++M ++   ID++TY T+LG 
Sbjct: 113 NFFNWVTEKNGFRPSSAMYSLILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGV 172

Query: 187 FKAAKMINDANALNEYFTKVTRDSASNAIVKSVVQVVLKSDCDDNVKKKLWELK 348
           FK  KM ++  AL  ++ ++ +++A + +VK VV++V  S     V+KKL ELK
Sbjct: 173 FKKGKMASEEVALTHFYNRMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGELK 226



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 29/77 (37%), Positives = 44/77 (57%)
 Frame = +1

Query: 1   ALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEDCDIDEDTYSTVL 180
           AL FF WV    G++ S   Y+++  VLG  ++I EFW +V+ M  +  ++D DTY  + 
Sbjct: 248 ALRFFQWVGECPGYEHSSITYNVIARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTYIKIS 307

Query: 181 GNFKAAKMINDANALNE 231
             F+  KM+ DA  L E
Sbjct: 308 RQFQKNKMLEDAVKLYE 324


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 39/114 (34%), Positives = 73/114 (64%)
 Frame = +1

Query: 10  FFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEDCDIDEDTYSTVLGNF 189
           FF WVC +  F+PS +VYSL++ +L  K+T+ +FW  ++ M +    +DE+TY T+   F
Sbjct: 113 FFNWVCKKVWFRPSCSVYSLIVRILAAKDTMKQFWVTLRMMKENGFFLDEETYLTISVGF 172

Query: 190 KAAKMINDANALNEYFTKVTRDSASNAIVKSVVQVVLKSDCDDNVKKKLWELKV 351
           K  KM +D+ AL  ++ ++  ++A  ++V +VV ++ +S+  D V  +L +L++
Sbjct: 173 KREKMDSDSVALTHFYNRMLEENAMQSVVSNVVGIISRSEWGDEVVGELAKLEI 226


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 38/117 (32%), Positives = 69/117 (58%)
 Frame = +1

Query: 1   ALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEDCDIDEDTYSTVL 180
           A +FF W   +NG   S ++YS++L +    E++  FW  ++ M +    +DE+TY T+L
Sbjct: 104 ASEFFNWASGKNGSTQSSSIYSMLLRIFVQNESMKLFWITLRLMKERGFYLDEETYKTIL 163

Query: 181 GNFKAAKMINDANALNEYFTKVTRDSASNAIVKSVVQVVLKSDCDDNVKKKLWELKV 351
           G  + +K   DA  L  ++ ++ + +A +++V+ VV +VL SD  ++V  KL EL +
Sbjct: 164 GVLRKSKKAADATGLTHFYNRMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEELGI 220


>ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 35/114 (30%), Positives = 62/114 (54%)
 Frame = +1

Query: 10  FFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEDCDIDEDTYSTVLGNF 189
           FF WV  +  ++PS ++Y L+L VL  +ETI  FW  ++ M  +    DE+ Y  +L  F
Sbjct: 117 FFNWVSAKEWYRPSSSLYGLILRVLATEETIKLFWITLRTMKTKGFYFDEEMYFPILAGF 176

Query: 190 KAAKMINDANALNEYFTKVTRDSASNAIVKSVVQVVLKSDCDDNVKKKLWELKV 351
           K   M  D  +L  ++++  +++A   +V  VV ++  S+  D V   L +L++
Sbjct: 177 KRKNMNKDRVSLTRFYSQGIQENAMQIVVTKVVDIISGSEWGDEVMSNLAKLEI 230