BLASTX nr result
ID: Coptis25_contig00032912
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00032912 (562 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002521663.1| pentatricopeptide repeat-containing protein,... 229 2e-58 ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containi... 216 2e-54 ref|XP_003593286.1| Pentatricopeptide repeat-containing protein ... 214 7e-54 sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-c... 204 1e-50 ref|NP_194836.1| pentatricopeptide repeat-containing protein [Ar... 204 1e-50 >ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539054|gb|EEF40650.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 578 Score = 229 bits (584), Expect = 2e-58 Identities = 102/186 (54%), Positives = 147/186 (79%) Frame = -3 Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381 +LI+MY+KCG + ASHQIFKE+ I+DSVSWS LI A+GL+G+ EAL LF++M + +EP Sbjct: 371 ALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQLQGVEP 430 Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201 D +TFLA+LSAC+H G +++ ++F+ +++D ++ LT+EHYAC +DLLG+SG V++A+ I Sbjct: 431 DAMTFLAVLSACNHSGLVKEGQQIFDNVKKDGKVSLTVEHYACLVDLLGKSGKVDDAFDI 490 Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLIASEPDNPASYMLSRMVYAENGDW 21 + MP KPS IWSSLVSACK HGRL++A++L LI SEP N A++ L M+YAE+G+W Sbjct: 491 LRAMPMKPSTTIWSSLVSACKIHGRLEIAERLAQELIKSEPSNAANHTLLSMIYAESGNW 550 Query: 20 YGAEEV 3 + E+V Sbjct: 551 FAVEDV 556 Score = 56.2 bits (134), Expect = 3e-06 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 5/167 (2%) Frame = -3 Query: 560 SLIDMYAKCGH-LNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIE 384 SLI +Y + L + F+ ++D V WS++I ++ S EAL+LF M + E Sbjct: 269 SLIHIYCRSREGLQLAKLTFERSNVKDVVMWSSIIGSYCRSADSIEALKLFRWMRADGTE 328 Query: 383 PDNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYA--CYIDLLGRSGNVENA 210 P+++T LA+++AC+ ++ I + L + Y I++ + G V + Sbjct: 329 PNSVTLLAVITACTTLTSLKNGYGTHGYIV---KCGLNFDTYIGNALINMYSKCGCVVAS 385 Query: 209 YTIITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVH--RLIASEPD 75 + I M K S + WS+L++A HG A L H +L EPD Sbjct: 386 HQIFKEMHIKDSVS-WSTLITAYGLHGHGKEALCLFHEMQLQGVEPD 431 Score = 55.5 bits (132), Expect = 6e-06 Identities = 34/143 (23%), Positives = 65/143 (45%) Frame = -3 Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381 S I YAK ++ ++F +P++D +SW+ +I + GY + +F +M E I P Sbjct: 66 SFISFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECGIVP 125 Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201 +++S C G ++ + + D RI + +D +SG+ A + Sbjct: 126 KPELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLMALRV 185 Query: 200 ITGMPYKPSPAIWSSLVSACKTH 132 + K + W++LVS C + Sbjct: 186 FDQIEVK-NVVSWTALVSGCSAN 207 >ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial-like [Glycine max] Length = 601 Score = 216 bits (550), Expect = 2e-54 Identities = 102/186 (54%), Positives = 137/186 (73%) Frame = -3 Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381 +LI+MYAKCG LN S ++F E+P RD+V+WS+LI A+GL+G +ALQ+F +M E ++P Sbjct: 396 ALINMYAKCGCLNGSRKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQIFYEMNERGVKP 455 Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201 D ITFLA+LSAC+H G + + ++F+Q++ D I LT+EHYAC +DLLGRSG +E A I Sbjct: 456 DAITFLAVLSACNHAGLVAEGQRIFKQVRADCEIPLTIEHYACLVDLLGRSGKLEYALEI 515 Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLIASEPDNPASYMLSRMVYAENGDW 21 MP KPS IWSSLVSACK HGRLD+A+ L +LI SEP+N +Y L +YAE+G W Sbjct: 516 RRTMPMKPSARIWSSLVSACKLHGRLDIAEMLAPQLIRSEPNNAGNYTLLNTIYAEHGHW 575 Query: 20 YGAEEV 3 E+V Sbjct: 576 LDTEQV 581 Score = 78.2 bits (191), Expect = 8e-13 Identities = 48/157 (30%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Frame = -3 Query: 560 SLIDMYAKCGH-LNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIE 384 +L++MY +CG ++ + IF+ RD V WS++I + G S +AL+LFN+M E+IE Sbjct: 294 ALVNMYCQCGEPMHLAELIFEGSSFRDVVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIE 353 Query: 383 PDNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYT 204 P+ +T LA++SAC++ ++ C L I + ++ I++ + G + + Sbjct: 354 PNYVTLLAVISACTNLSSLKHGCGLHGYIFKFG-FCFSISVGNALINMYAKCGCLNGSRK 412 Query: 203 IITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRL 93 + MP + + WSSL+SA HG + A Q+ + + Sbjct: 413 MFLEMPNRDN-VTWSSLISAYGLHGCGEQALQIFYEM 448 Score = 59.7 bits (143), Expect = 3e-07 Identities = 37/149 (24%), Positives = 69/149 (46%) Frame = -3 Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381 S+I MY K + ++ Q+F +P RD ++W++LI + GY EAL+ N + + P Sbjct: 91 SIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEALNDVYLLGLVP 150 Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201 +++S C + ++ + + RI ++ +D R G+ A + Sbjct: 151 KPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDFYFRCGDSLMALRV 210 Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVA 114 GM K + W++++S C H D A Sbjct: 211 FDGMEVK-NVVSWTTMISGCIAHQDYDEA 238 >ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 622 Score = 214 bits (545), Expect = 7e-54 Identities = 102/186 (54%), Positives = 137/186 (73%) Frame = -3 Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381 +LI+MYAKCG L+ S +IF E+P RDSV+W+++I A+GL+GY +ALQ F +M E ++ Sbjct: 415 ALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERGVKL 474 Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201 D +TFLA+LSAC+H G + + +LFEQ+ D I +T+EHYAC IDL GRSG +E+A I Sbjct: 475 DAVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHYACLIDLHGRSGKLEDALEI 534 Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLIASEPDNPASYMLSRMVYAENGDW 21 + MP KPS IWSSLVS+CK HGRLD+A+ L +LI SEP+N ASY L M++AE G W Sbjct: 535 LRTMPMKPSARIWSSLVSSCKLHGRLDIAESLSSQLIRSEPNNAASYTLLSMIHAEKGRW 594 Query: 20 YGAEEV 3 E+V Sbjct: 595 LDIEQV 600 Score = 77.8 bits (190), Expect = 1e-12 Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 7/158 (4%) Frame = -3 Query: 560 SLIDMYAKCGH-LNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIE 384 +LI +Y +CG L+ + +IF+ +RD V WS++I ++ G S +AL+LFN+M E+ E Sbjct: 313 ALIYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETE 372 Query: 383 PDNITFLAILSACS------HGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGN 222 P+ +T LA++SAC+ HGG I F I ++ I++ + G+ Sbjct: 373 PNYVTLLAVISACTNLSSFKHGGVIHGYILKF-------GIGFSIFVCNALINMYAKCGS 425 Query: 221 VENAYTIITGMPYKPSPAIWSSLVSACKTHGRLDVAKQ 108 ++++ I MP + S W+S++SA HG + A Q Sbjct: 426 LDDSRKIFLEMPSRDS-VTWNSMISAYGLHGYGEQALQ 462 Score = 57.0 bits (136), Expect = 2e-06 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 1/163 (0%) Frame = -3 Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381 + +D Y +CG + +F E+ +++ VSW+A+I AL + +M E + P Sbjct: 212 AFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSP 271 Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSG-NVENAYT 204 + +T +A+L+AC+ GF++ K D I L G ++ A Sbjct: 272 NRVTLIALLAACARPGFVKYG-KEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAER 330 Query: 203 IITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLIASEPD 75 I G + +WSS++ + G D A +L +++ E + Sbjct: 331 IFEGSSLR-DVVLWSSIIGSYARRGESDKALKLFNKMRTEETE 372 Score = 55.1 bits (131), Expect = 8e-06 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 6/155 (3%) Frame = -3 Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381 S+I MYAK + ++ Q+F +P RD+++W+++I A+ G EALQ+ P Sbjct: 106 SIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFLGFLP 165 Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQ----QDNRIDLTLEHY--ACYIDLLGRSGNV 219 +++S C G ++ ++ QI D RI + + ++D R G+ Sbjct: 166 KPELLASMVSMC--GREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDS 223 Query: 218 ENAYTIITGMPYKPSPAIWSSLVSACKTHGRLDVA 114 A ++ M K + W++++S C + DVA Sbjct: 224 LMARSVFDEMEVK-NEVSWTAVISGCANNQDYDVA 257 >sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31070, mitochondrial; Flags: Precursor Length = 624 Score = 204 bits (518), Expect = 1e-50 Identities = 97/187 (51%), Positives = 142/187 (75%), Gaps = 1/187 (0%) Frame = -3 Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381 +LIDMYAKCG L+A+ ++F E+ +D VSWS++I A+GL+G+ +EAL++F M++ E Sbjct: 404 ALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEV 463 Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201 D++ FLAILSAC+H G +E+A +F Q + + +TLEHYACYI+LLGR G +++A+ + Sbjct: 464 DDMAFLAILSACNHAGLVEEAQTIFTQAGK-YHMPVTLEHYACYINLLGRFGKIDDAFEV 522 Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVA-KQLVHRLIASEPDNPASYMLSRMVYAENGD 24 MP KPS IWSSL+SAC+THGRLDVA K + + L+ SEPDNPA+Y+L ++ E+G+ Sbjct: 523 TINMPMKPSARIWSSLLSACETHGRLDVAGKIIANELMKSEPDNPANYVLLSKIHTESGN 582 Query: 23 WYGAEEV 3 ++ AEEV Sbjct: 583 YHAAEEV 589 Score = 76.6 bits (187), Expect = 2e-12 Identities = 46/157 (29%), Positives = 84/157 (53%) Frame = -3 Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381 + + MY +CG+++ S +F+ +RD V WS++I + G +E + L NQM +E IE Sbjct: 303 AFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEA 362 Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201 +++T LAI+SAC++ + A + QI + + L A ID+ + G++ A + Sbjct: 363 NSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNA-LIDMYAKCGSLSAAREV 421 Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLI 90 + K + WSS+++A HG A ++ +I Sbjct: 422 FYELTEKDLVS-WSSMINAYGLHGHGSEALEIFKGMI 457 >ref|NP_194836.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|2980759|emb|CAA18186.1| putative protein [Arabidopsis thaliana] gi|7270009|emb|CAB79825.1| putative protein [Arabidopsis thaliana] gi|332660453|gb|AEE85853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 613 Score = 204 bits (518), Expect = 1e-50 Identities = 97/187 (51%), Positives = 142/187 (75%), Gaps = 1/187 (0%) Frame = -3 Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381 +LIDMYAKCG L+A+ ++F E+ +D VSWS++I A+GL+G+ +EAL++F M++ E Sbjct: 393 ALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEV 452 Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201 D++ FLAILSAC+H G +E+A +F Q + + +TLEHYACYI+LLGR G +++A+ + Sbjct: 453 DDMAFLAILSACNHAGLVEEAQTIFTQAGK-YHMPVTLEHYACYINLLGRFGKIDDAFEV 511 Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVA-KQLVHRLIASEPDNPASYMLSRMVYAENGD 24 MP KPS IWSSL+SAC+THGRLDVA K + + L+ SEPDNPA+Y+L ++ E+G+ Sbjct: 512 TINMPMKPSARIWSSLLSACETHGRLDVAGKIIANELMKSEPDNPANYVLLSKIHTESGN 571 Query: 23 WYGAEEV 3 ++ AEEV Sbjct: 572 YHAAEEV 578 Score = 76.6 bits (187), Expect = 2e-12 Identities = 46/157 (29%), Positives = 84/157 (53%) Frame = -3 Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381 + + MY +CG+++ S +F+ +RD V WS++I + G +E + L NQM +E IE Sbjct: 292 AFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEA 351 Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201 +++T LAI+SAC++ + A + QI + + L A ID+ + G++ A + Sbjct: 352 NSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNA-LIDMYAKCGSLSAAREV 410 Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLI 90 + K + WSS+++A HG A ++ +I Sbjct: 411 FYELTEKDLVS-WSSMINAYGLHGHGSEALEIFKGMI 446