BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032912
         (562 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521663.1| pentatricopeptide repeat-containing protein,...   229   2e-58
ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containi...   216   2e-54
ref|XP_003593286.1| Pentatricopeptide repeat-containing protein ...   214   7e-54
sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-c...   204   1e-50
ref|NP_194836.1| pentatricopeptide repeat-containing protein [Ar...   204   1e-50

>ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539054|gb|EEF40650.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 578

 Score =  229 bits (584), Expect = 2e-58
 Identities = 102/186 (54%), Positives = 147/186 (79%)
 Frame = -3

Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381
           +LI+MY+KCG + ASHQIFKE+ I+DSVSWS LI A+GL+G+  EAL LF++M  + +EP
Sbjct: 371 ALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQLQGVEP 430

Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201
           D +TFLA+LSAC+H G +++  ++F+ +++D ++ LT+EHYAC +DLLG+SG V++A+ I
Sbjct: 431 DAMTFLAVLSACNHSGLVKEGQQIFDNVKKDGKVSLTVEHYACLVDLLGKSGKVDDAFDI 490

Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLIASEPDNPASYMLSRMVYAENGDW 21
           +  MP KPS  IWSSLVSACK HGRL++A++L   LI SEP N A++ L  M+YAE+G+W
Sbjct: 491 LRAMPMKPSTTIWSSLVSACKIHGRLEIAERLAQELIKSEPSNAANHTLLSMIYAESGNW 550

Query: 20  YGAEEV 3
           +  E+V
Sbjct: 551 FAVEDV 556



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
 Frame = -3

Query: 560 SLIDMYAKCGH-LNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIE 384
           SLI +Y +    L  +   F+   ++D V WS++I ++     S EAL+LF  M  +  E
Sbjct: 269 SLIHIYCRSREGLQLAKLTFERSNVKDVVMWSSIIGSYCRSADSIEALKLFRWMRADGTE 328

Query: 383 PDNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYA--CYIDLLGRSGNVENA 210
           P+++T LA+++AC+    ++        I    +  L  + Y     I++  + G V  +
Sbjct: 329 PNSVTLLAVITACTTLTSLKNGYGTHGYIV---KCGLNFDTYIGNALINMYSKCGCVVAS 385

Query: 209 YTIITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVH--RLIASEPD 75
           + I   M  K S + WS+L++A   HG    A  L H  +L   EPD
Sbjct: 386 HQIFKEMHIKDSVS-WSTLITAYGLHGHGKEALCLFHEMQLQGVEPD 431



 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 34/143 (23%), Positives = 65/143 (45%)
 Frame = -3

Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381
           S I  YAK     ++ ++F  +P++D +SW+ +I  +   GY  +   +F +M E  I P
Sbjct: 66  SFISFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECGIVP 125

Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201
                 +++S C   G ++    +   +  D RI   +      +D   +SG+   A  +
Sbjct: 126 KPELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLMALRV 185

Query: 200 ITGMPYKPSPAIWSSLVSACKTH 132
              +  K +   W++LVS C  +
Sbjct: 186 FDQIEVK-NVVSWTALVSGCSAN 207


>ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
           mitochondrial-like [Glycine max]
          Length = 601

 Score =  216 bits (550), Expect = 2e-54
 Identities = 102/186 (54%), Positives = 137/186 (73%)
 Frame = -3

Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381
           +LI+MYAKCG LN S ++F E+P RD+V+WS+LI A+GL+G   +ALQ+F +M E  ++P
Sbjct: 396 ALINMYAKCGCLNGSRKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQIFYEMNERGVKP 455

Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201
           D ITFLA+LSAC+H G + +  ++F+Q++ D  I LT+EHYAC +DLLGRSG +E A  I
Sbjct: 456 DAITFLAVLSACNHAGLVAEGQRIFKQVRADCEIPLTIEHYACLVDLLGRSGKLEYALEI 515

Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLIASEPDNPASYMLSRMVYAENGDW 21
              MP KPS  IWSSLVSACK HGRLD+A+ L  +LI SEP+N  +Y L   +YAE+G W
Sbjct: 516 RRTMPMKPSARIWSSLVSACKLHGRLDIAEMLAPQLIRSEPNNAGNYTLLNTIYAEHGHW 575

Query: 20  YGAEEV 3
              E+V
Sbjct: 576 LDTEQV 581



 Score = 78.2 bits (191), Expect = 8e-13
 Identities = 48/157 (30%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
 Frame = -3

Query: 560 SLIDMYAKCGH-LNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIE 384
           +L++MY +CG  ++ +  IF+    RD V WS++I +    G S +AL+LFN+M  E+IE
Sbjct: 294 ALVNMYCQCGEPMHLAELIFEGSSFRDVVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIE 353

Query: 383 PDNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYT 204
           P+ +T LA++SAC++   ++  C L   I +      ++      I++  + G +  +  
Sbjct: 354 PNYVTLLAVISACTNLSSLKHGCGLHGYIFKFG-FCFSISVGNALINMYAKCGCLNGSRK 412

Query: 203 IITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRL 93
           +   MP + +   WSSL+SA   HG  + A Q+ + +
Sbjct: 413 MFLEMPNRDN-VTWSSLISAYGLHGCGEQALQIFYEM 448



 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 37/149 (24%), Positives = 69/149 (46%)
 Frame = -3

Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381
           S+I MY K   + ++ Q+F  +P RD ++W++LI  +   GY  EAL+  N +    + P
Sbjct: 91  SIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEALNDVYLLGLVP 150

Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201
                 +++S C      +   ++   +  + RI  ++      +D   R G+   A  +
Sbjct: 151 KPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDFYFRCGDSLMALRV 210

Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVA 114
             GM  K +   W++++S C  H   D A
Sbjct: 211 FDGMEVK-NVVSWTTMISGCIAHQDYDEA 238


>ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482334|gb|AES63537.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 622

 Score =  214 bits (545), Expect = 7e-54
 Identities = 102/186 (54%), Positives = 137/186 (73%)
 Frame = -3

Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381
           +LI+MYAKCG L+ S +IF E+P RDSV+W+++I A+GL+GY  +ALQ F +M E  ++ 
Sbjct: 415 ALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERGVKL 474

Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201
           D +TFLA+LSAC+H G + +  +LFEQ+  D  I +T+EHYAC IDL GRSG +E+A  I
Sbjct: 475 DAVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHYACLIDLHGRSGKLEDALEI 534

Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLIASEPDNPASYMLSRMVYAENGDW 21
           +  MP KPS  IWSSLVS+CK HGRLD+A+ L  +LI SEP+N ASY L  M++AE G W
Sbjct: 535 LRTMPMKPSARIWSSLVSSCKLHGRLDIAESLSSQLIRSEPNNAASYTLLSMIHAEKGRW 594

Query: 20  YGAEEV 3
              E+V
Sbjct: 595 LDIEQV 600



 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 7/158 (4%)
 Frame = -3

Query: 560 SLIDMYAKCGH-LNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIE 384
           +LI +Y +CG  L+ + +IF+   +RD V WS++I ++   G S +AL+LFN+M  E+ E
Sbjct: 313 ALIYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETE 372

Query: 383 PDNITFLAILSACS------HGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGN 222
           P+ +T LA++SAC+      HGG I      F        I  ++      I++  + G+
Sbjct: 373 PNYVTLLAVISACTNLSSFKHGGVIHGYILKF-------GIGFSIFVCNALINMYAKCGS 425

Query: 221 VENAYTIITGMPYKPSPAIWSSLVSACKTHGRLDVAKQ 108
           ++++  I   MP + S   W+S++SA   HG  + A Q
Sbjct: 426 LDDSRKIFLEMPSRDS-VTWNSMISAYGLHGYGEQALQ 462



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 1/163 (0%)
 Frame = -3

Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381
           + +D Y +CG    +  +F E+ +++ VSW+A+I           AL  + +M  E + P
Sbjct: 212 AFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSP 271

Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSG-NVENAYT 204
           + +T +A+L+AC+  GF++   K           D         I L    G ++  A  
Sbjct: 272 NRVTLIALLAACARPGFVKYG-KEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAER 330

Query: 203 IITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLIASEPD 75
           I  G   +    +WSS++ +    G  D A +L +++   E +
Sbjct: 331 IFEGSSLR-DVVLWSSIIGSYARRGESDKALKLFNKMRTEETE 372



 Score = 55.1 bits (131), Expect = 8e-06
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 6/155 (3%)
 Frame = -3

Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381
           S+I MYAK   + ++ Q+F  +P RD+++W+++I A+   G   EALQ+          P
Sbjct: 106 SIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFLGFLP 165

Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQ----QDNRIDLTLEHY--ACYIDLLGRSGNV 219
                 +++S C  G  ++   ++  QI      D RI +    +    ++D   R G+ 
Sbjct: 166 KPELLASMVSMC--GREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDS 223

Query: 218 ENAYTIITGMPYKPSPAIWSSLVSACKTHGRLDVA 114
             A ++   M  K +   W++++S C  +   DVA
Sbjct: 224 LMARSVFDEMEVK-NEVSWTAVISGCANNQDYDVA 257


>sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31070, mitochondrial; Flags: Precursor
          Length = 624

 Score =  204 bits (518), Expect = 1e-50
 Identities = 97/187 (51%), Positives = 142/187 (75%), Gaps = 1/187 (0%)
 Frame = -3

Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381
           +LIDMYAKCG L+A+ ++F E+  +D VSWS++I A+GL+G+ +EAL++F  M++   E 
Sbjct: 404 ALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEV 463

Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201
           D++ FLAILSAC+H G +E+A  +F Q  +   + +TLEHYACYI+LLGR G +++A+ +
Sbjct: 464 DDMAFLAILSACNHAGLVEEAQTIFTQAGK-YHMPVTLEHYACYINLLGRFGKIDDAFEV 522

Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVA-KQLVHRLIASEPDNPASYMLSRMVYAENGD 24
              MP KPS  IWSSL+SAC+THGRLDVA K + + L+ SEPDNPA+Y+L   ++ E+G+
Sbjct: 523 TINMPMKPSARIWSSLLSACETHGRLDVAGKIIANELMKSEPDNPANYVLLSKIHTESGN 582

Query: 23  WYGAEEV 3
           ++ AEEV
Sbjct: 583 YHAAEEV 589



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 46/157 (29%), Positives = 84/157 (53%)
 Frame = -3

Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381
           + + MY +CG+++ S  +F+   +RD V WS++I  +   G  +E + L NQM +E IE 
Sbjct: 303 AFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEA 362

Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201
           +++T LAI+SAC++   +  A  +  QI +   +   L   A  ID+  + G++  A  +
Sbjct: 363 NSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNA-LIDMYAKCGSLSAAREV 421

Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLI 90
              +  K   + WSS+++A   HG    A ++   +I
Sbjct: 422 FYELTEKDLVS-WSSMINAYGLHGHGSEALEIFKGMI 457


>ref|NP_194836.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|2980759|emb|CAA18186.1| putative protein [Arabidopsis
           thaliana] gi|7270009|emb|CAB79825.1| putative protein
           [Arabidopsis thaliana] gi|332660453|gb|AEE85853.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 613

 Score =  204 bits (518), Expect = 1e-50
 Identities = 97/187 (51%), Positives = 142/187 (75%), Gaps = 1/187 (0%)
 Frame = -3

Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381
           +LIDMYAKCG L+A+ ++F E+  +D VSWS++I A+GL+G+ +EAL++F  M++   E 
Sbjct: 393 ALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEV 452

Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201
           D++ FLAILSAC+H G +E+A  +F Q  +   + +TLEHYACYI+LLGR G +++A+ +
Sbjct: 453 DDMAFLAILSACNHAGLVEEAQTIFTQAGK-YHMPVTLEHYACYINLLGRFGKIDDAFEV 511

Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVA-KQLVHRLIASEPDNPASYMLSRMVYAENGD 24
              MP KPS  IWSSL+SAC+THGRLDVA K + + L+ SEPDNPA+Y+L   ++ E+G+
Sbjct: 512 TINMPMKPSARIWSSLLSACETHGRLDVAGKIIANELMKSEPDNPANYVLLSKIHTESGN 571

Query: 23  WYGAEEV 3
           ++ AEEV
Sbjct: 572 YHAAEEV 578



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 46/157 (29%), Positives = 84/157 (53%)
 Frame = -3

Query: 560 SLIDMYAKCGHLNASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEP 381
           + + MY +CG+++ S  +F+   +RD V WS++I  +   G  +E + L NQM +E IE 
Sbjct: 292 AFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEA 351

Query: 380 DNITFLAILSACSHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTI 201
           +++T LAI+SAC++   +  A  +  QI +   +   L   A  ID+  + G++  A  +
Sbjct: 352 NSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNA-LIDMYAKCGSLSAAREV 410

Query: 200 ITGMPYKPSPAIWSSLVSACKTHGRLDVAKQLVHRLI 90
              +  K   + WSS+++A   HG    A ++   +I
Sbjct: 411 FYELTEKDLVS-WSSMINAYGLHGHGSEALEIFKGMI 446