BLASTX nr result
ID: Coptis25_contig00032859
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00032859 (244 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containi... 116 2e-24 ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containi... 115 5e-24 ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containi... 115 5e-24 ref|XP_002303960.1| predicted protein [Populus trichocarpa] gi|2... 114 6e-24 ref|XP_002525566.1| pentatricopeptide repeat-containing protein,... 109 3e-22 >ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera] Length = 849 Score = 116 bits (291), Expect = 2e-24 Identities = 57/81 (70%), Positives = 67/81 (82%) Frame = -2 Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64 E+G RPDSITIV+ILPA ADVG LRIG+ IHG+ +RA S VNVSTAL++MYSKCG V Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVG 328 Query: 63 TARLVFDKMRARNVVSWNSMI 1 TARL+FD+M + VVSWNSMI Sbjct: 329 TARLIFDRMTGKTVVSWNSMI 349 Score = 82.0 bits (201), Expect = 4e-14 Identities = 40/77 (51%), Positives = 55/77 (71%) Frame = -2 Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52 +PDS T+V+++PA A++ L K IHG VIR L V V+TAL++MY+KCG V TAR Sbjct: 475 KPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARK 534 Query: 51 VFDKMRARNVVSWNSMI 1 +FD M R+V +WN+MI Sbjct: 535 LFDMMDERHVTTWNAMI 551 Score = 66.2 bits (160), Expect = 3e-09 Identities = 30/74 (40%), Positives = 51/74 (68%) Frame = -2 Query: 222 SITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARLVFD 43 ++T++ L ACAD+G + G+ +H + + LGS V+V +L++MYSKC VD A +F+ Sbjct: 377 NVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFE 436 Query: 42 KMRARNVVSWNSMI 1 ++ + +VSWN+MI Sbjct: 437 NLQHKTLVSWNAMI 450 Score = 57.8 bits (138), Expect = 9e-07 Identities = 32/79 (40%), Positives = 44/79 (55%) Frame = -2 Query: 237 GHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTA 58 G RP +L C D LR GK IH +I S V T ++NMY+KC LV+ A Sbjct: 170 GVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEA 229 Query: 57 RLVFDKMRARNVVSWNSMI 1 +FD+M R++V WN++I Sbjct: 230 YKMFDRMPERDLVCWNTII 248 >ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus] Length = 821 Score = 115 bits (287), Expect = 5e-24 Identities = 53/81 (65%), Positives = 65/81 (80%) Frame = -2 Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64 ++G RPDSIT+VT+LPA ADVG L +GK IHG+ IRA LVN+STAL +MYSKCG V+ Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300 Query: 63 TARLVFDKMRARNVVSWNSMI 1 TARL+FD M + VVSWNSM+ Sbjct: 301 TARLIFDGMDQKTVVSWNSMM 321 Score = 82.0 bits (201), Expect = 4e-14 Identities = 37/79 (46%), Positives = 57/79 (72%) Frame = -2 Query: 237 GHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTA 58 G +PDS T+V+++PA A++ R K IHG +IR+ L + V+TAL++MYSKCG + A Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMA 504 Query: 57 RLVFDKMRARNVVSWNSMI 1 R +FD + R+V++WN+MI Sbjct: 505 RKLFDMISDRHVITWNAMI 523 Score = 78.6 bits (192), Expect = 5e-13 Identities = 39/81 (48%), Positives = 54/81 (66%) Frame = -2 Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64 E+G P +TI+ L ACAD+G L GK +H FV + NLGS ++V +L++MYSKC VD Sbjct: 342 EEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVD 401 Query: 63 TARLVFDKMRARNVVSWNSMI 1 A +F+ + R VSWN+MI Sbjct: 402 IASDIFNNLNGRTHVSWNAMI 422 Score = 58.5 bits (140), Expect = 5e-07 Identities = 29/77 (37%), Positives = 45/77 (58%) Frame = -2 Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52 +P +L C D L+ GK IHG +I + + V T ++NMY+KC +D A Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYK 203 Query: 51 VFDKMRARNVVSWNSMI 1 +FD+M R++VSWN++I Sbjct: 204 MFDRMPERDLVSWNTII 220 >ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus] Length = 821 Score = 115 bits (287), Expect = 5e-24 Identities = 53/81 (65%), Positives = 65/81 (80%) Frame = -2 Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64 ++G RPDSIT+VT+LPA ADVG L +GK IHG+ IRA LVN+STAL +MYSKCG V+ Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300 Query: 63 TARLVFDKMRARNVVSWNSMI 1 TARL+FD M + VVSWNSM+ Sbjct: 301 TARLIFDGMDQKTVVSWNSMM 321 Score = 82.0 bits (201), Expect = 4e-14 Identities = 37/79 (46%), Positives = 57/79 (72%) Frame = -2 Query: 237 GHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTA 58 G +PDS T+V+++PA A++ R K IHG +IR+ L + V+TAL++MYSKCG + A Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMA 504 Query: 57 RLVFDKMRARNVVSWNSMI 1 R +FD + R+V++WN+MI Sbjct: 505 RKLFDMISDRHVITWNAMI 523 Score = 78.6 bits (192), Expect = 5e-13 Identities = 39/81 (48%), Positives = 54/81 (66%) Frame = -2 Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64 E+G P +TI+ L ACAD+G L GK +H FV + NLGS ++V +L++MYSKC VD Sbjct: 342 EEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVD 401 Query: 63 TARLVFDKMRARNVVSWNSMI 1 A +F+ + R VSWN+MI Sbjct: 402 IASDIFNNLNGRTHVSWNAMI 422 Score = 58.5 bits (140), Expect = 5e-07 Identities = 29/77 (37%), Positives = 45/77 (58%) Frame = -2 Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52 +P +L C D L+ GK IHG +I + + V T ++NMY+KC +D A Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYK 203 Query: 51 VFDKMRARNVVSWNSMI 1 +FD+M R++VSWN++I Sbjct: 204 MFDRMPERDLVSWNTII 220 >ref|XP_002303960.1| predicted protein [Populus trichocarpa] gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa] Length = 704 Score = 114 bits (286), Expect = 6e-24 Identities = 56/81 (69%), Positives = 65/81 (80%) Frame = -2 Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64 E+GHRPDSITIV+ILPA AD LRIG +HG+V+RA SLVNVSTAL++MYSKCG V Sbjct: 124 EEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVS 183 Query: 63 TARLVFDKMRARNVVSWNSMI 1 AR++FD M R VVSWNSMI Sbjct: 184 IARVIFDGMDHRTVVSWNSMI 204 Score = 84.7 bits (208), Expect = 7e-15 Identities = 40/77 (51%), Positives = 56/77 (72%) Frame = -2 Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52 +PDS T+V+++PA A++ R K IHG VIR L V V TAL++MY+KCG + TAR Sbjct: 330 KPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARK 389 Query: 51 VFDKMRARNVVSWNSMI 1 +FD M AR+V++WN+MI Sbjct: 390 LFDMMNARHVITWNAMI 406 Score = 72.0 bits (175), Expect = 5e-11 Identities = 35/81 (43%), Positives = 54/81 (66%) Frame = -2 Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64 ++G +P ++T++ L ACAD+G L GK +H V + L S V+V +L++MYSKC VD Sbjct: 225 DEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVD 284 Query: 63 TARLVFDKMRARNVVSWNSMI 1 A +F +R + +VSWN+MI Sbjct: 285 IAADIFKNLRNKTLVSWNAMI 305 Score = 56.2 bits (134), Expect = 3e-06 Identities = 29/77 (37%), Positives = 43/77 (55%) Frame = -2 Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52 RP +L C D L+ GK IHG VI + + T ++NMY+KC ++ A Sbjct: 27 RPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYN 86 Query: 51 VFDKMRARNVVSWNSMI 1 +FD+M R++V WN+MI Sbjct: 87 MFDRMPERDLVCWNTMI 103 >ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 563 Score = 109 bits (272), Expect = 3e-22 Identities = 51/81 (62%), Positives = 65/81 (80%) Frame = -2 Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64 E+GHRPDS+TIV++LPA AD+ LR GK IH +VIRA LVN+STAL++MYSKC + Sbjct: 236 EEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWLVNISTALVDMYSKCDSLG 295 Query: 63 TARLVFDKMRARNVVSWNSMI 1 TAR++FD M +R VV+WNSMI Sbjct: 296 TARVIFDGMGSRTVVTWNSMI 316 Score = 82.4 bits (202), Expect = 3e-14 Identities = 39/77 (50%), Positives = 55/77 (71%) Frame = -2 Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52 +PDS T+V+++PA A++ R K IHG VIR L V V TAL++MY+KCG + TAR Sbjct: 442 KPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRLLDDTVFVMTALVDMYAKCGAIHTARK 501 Query: 51 VFDKMRARNVVSWNSMI 1 +F+ M R+V++WNSMI Sbjct: 502 LFNMMSERHVITWNSMI 518 Score = 71.6 bits (174), Expect = 6e-11 Identities = 35/81 (43%), Positives = 53/81 (65%) Frame = -2 Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64 ++G +P +T++ +L ACAD G L GK +H V L S V+V +L++MYSKC VD Sbjct: 337 DEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVD 396 Query: 63 TARLVFDKMRARNVVSWNSMI 1 A +F+ ++ R +VSWN+MI Sbjct: 397 FAANLFENLQNRTLVSWNAMI 417