BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032859
         (244 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containi...   115   5e-24
ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containi...   115   5e-24
ref|XP_002303960.1| predicted protein [Populus trichocarpa] gi|2...   114   6e-24
ref|XP_002525566.1| pentatricopeptide repeat-containing protein,...   109   3e-22

>ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  116 bits (291), Expect = 2e-24
 Identities = 57/81 (70%), Positives = 67/81 (82%)
 Frame = -2

Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64
           E+G RPDSITIV+ILPA ADVG LRIG+ IHG+ +RA   S VNVSTAL++MYSKCG V 
Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVG 328

Query: 63  TARLVFDKMRARNVVSWNSMI 1
           TARL+FD+M  + VVSWNSMI
Sbjct: 329 TARLIFDRMTGKTVVSWNSMI 349



 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 40/77 (51%), Positives = 55/77 (71%)
 Frame = -2

Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52
           +PDS T+V+++PA A++  L   K IHG VIR  L   V V+TAL++MY+KCG V TAR 
Sbjct: 475 KPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARK 534

Query: 51  VFDKMRARNVVSWNSMI 1
           +FD M  R+V +WN+MI
Sbjct: 535 LFDMMDERHVTTWNAMI 551



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 30/74 (40%), Positives = 51/74 (68%)
 Frame = -2

Query: 222 SITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARLVFD 43
           ++T++  L ACAD+G +  G+ +H  + +  LGS V+V  +L++MYSKC  VD A  +F+
Sbjct: 377 NVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFE 436

Query: 42  KMRARNVVSWNSMI 1
            ++ + +VSWN+MI
Sbjct: 437 NLQHKTLVSWNAMI 450



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 32/79 (40%), Positives = 44/79 (55%)
 Frame = -2

Query: 237 GHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTA 58
           G RP       +L  C D   LR GK IH  +I     S V   T ++NMY+KC LV+ A
Sbjct: 170 GVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEA 229

Query: 57  RLVFDKMRARNVVSWNSMI 1
             +FD+M  R++V WN++I
Sbjct: 230 YKMFDRMPERDLVCWNTII 248


>ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  115 bits (287), Expect = 5e-24
 Identities = 53/81 (65%), Positives = 65/81 (80%)
 Frame = -2

Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64
           ++G RPDSIT+VT+LPA ADVG L +GK IHG+ IRA    LVN+STAL +MYSKCG V+
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 63  TARLVFDKMRARNVVSWNSMI 1
           TARL+FD M  + VVSWNSM+
Sbjct: 301 TARLIFDGMDQKTVVSWNSMM 321



 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 37/79 (46%), Positives = 57/79 (72%)
 Frame = -2

Query: 237 GHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTA 58
           G +PDS T+V+++PA A++   R  K IHG +IR+ L   + V+TAL++MYSKCG +  A
Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMA 504

Query: 57  RLVFDKMRARNVVSWNSMI 1
           R +FD +  R+V++WN+MI
Sbjct: 505 RKLFDMISDRHVITWNAMI 523



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 39/81 (48%), Positives = 54/81 (66%)
 Frame = -2

Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64
           E+G  P  +TI+  L ACAD+G L  GK +H FV + NLGS ++V  +L++MYSKC  VD
Sbjct: 342 EEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVD 401

Query: 63  TARLVFDKMRARNVVSWNSMI 1
            A  +F+ +  R  VSWN+MI
Sbjct: 402 IASDIFNNLNGRTHVSWNAMI 422



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/77 (37%), Positives = 45/77 (58%)
 Frame = -2

Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52
           +P       +L  C D   L+ GK IHG +I  +  + V   T ++NMY+KC  +D A  
Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYK 203

Query: 51  VFDKMRARNVVSWNSMI 1
           +FD+M  R++VSWN++I
Sbjct: 204 MFDRMPERDLVSWNTII 220


>ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  115 bits (287), Expect = 5e-24
 Identities = 53/81 (65%), Positives = 65/81 (80%)
 Frame = -2

Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64
           ++G RPDSIT+VT+LPA ADVG L +GK IHG+ IRA    LVN+STAL +MYSKCG V+
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 63  TARLVFDKMRARNVVSWNSMI 1
           TARL+FD M  + VVSWNSM+
Sbjct: 301 TARLIFDGMDQKTVVSWNSMM 321



 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 37/79 (46%), Positives = 57/79 (72%)
 Frame = -2

Query: 237 GHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTA 58
           G +PDS T+V+++PA A++   R  K IHG +IR+ L   + V+TAL++MYSKCG +  A
Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMA 504

Query: 57  RLVFDKMRARNVVSWNSMI 1
           R +FD +  R+V++WN+MI
Sbjct: 505 RKLFDMISDRHVITWNAMI 523



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 39/81 (48%), Positives = 54/81 (66%)
 Frame = -2

Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64
           E+G  P  +TI+  L ACAD+G L  GK +H FV + NLGS ++V  +L++MYSKC  VD
Sbjct: 342 EEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVD 401

Query: 63  TARLVFDKMRARNVVSWNSMI 1
            A  +F+ +  R  VSWN+MI
Sbjct: 402 IASDIFNNLNGRTHVSWNAMI 422



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/77 (37%), Positives = 45/77 (58%)
 Frame = -2

Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52
           +P       +L  C D   L+ GK IHG +I  +  + V   T ++NMY+KC  +D A  
Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYK 203

Query: 51  VFDKMRARNVVSWNSMI 1
           +FD+M  R++VSWN++I
Sbjct: 204 MFDRMPERDLVSWNTII 220


>ref|XP_002303960.1| predicted protein [Populus trichocarpa] gi|222841392|gb|EEE78939.1|
           predicted protein [Populus trichocarpa]
          Length = 704

 Score =  114 bits (286), Expect = 6e-24
 Identities = 56/81 (69%), Positives = 65/81 (80%)
 Frame = -2

Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64
           E+GHRPDSITIV+ILPA AD   LRIG  +HG+V+RA   SLVNVSTAL++MYSKCG V 
Sbjct: 124 EEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVS 183

Query: 63  TARLVFDKMRARNVVSWNSMI 1
            AR++FD M  R VVSWNSMI
Sbjct: 184 IARVIFDGMDHRTVVSWNSMI 204



 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 40/77 (51%), Positives = 56/77 (72%)
 Frame = -2

Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52
           +PDS T+V+++PA A++   R  K IHG VIR  L   V V TAL++MY+KCG + TAR 
Sbjct: 330 KPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARK 389

Query: 51  VFDKMRARNVVSWNSMI 1
           +FD M AR+V++WN+MI
Sbjct: 390 LFDMMNARHVITWNAMI 406



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 35/81 (43%), Positives = 54/81 (66%)
 Frame = -2

Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64
           ++G +P ++T++  L ACAD+G L  GK +H  V +  L S V+V  +L++MYSKC  VD
Sbjct: 225 DEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVD 284

Query: 63  TARLVFDKMRARNVVSWNSMI 1
            A  +F  +R + +VSWN+MI
Sbjct: 285 IAADIFKNLRNKTLVSWNAMI 305



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/77 (37%), Positives = 43/77 (55%)
 Frame = -2

Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52
           RP       +L  C D   L+ GK IHG VI +     +   T ++NMY+KC  ++ A  
Sbjct: 27  RPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYN 86

Query: 51  VFDKMRARNVVSWNSMI 1
           +FD+M  R++V WN+MI
Sbjct: 87  MFDRMPERDLVCWNTMI 103


>ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535145|gb|EEF36825.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 563

 Score =  109 bits (272), Expect = 3e-22
 Identities = 51/81 (62%), Positives = 65/81 (80%)
 Frame = -2

Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64
           E+GHRPDS+TIV++LPA AD+  LR GK IH +VIRA    LVN+STAL++MYSKC  + 
Sbjct: 236 EEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWLVNISTALVDMYSKCDSLG 295

Query: 63  TARLVFDKMRARNVVSWNSMI 1
           TAR++FD M +R VV+WNSMI
Sbjct: 296 TARVIFDGMGSRTVVTWNSMI 316



 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 39/77 (50%), Positives = 55/77 (71%)
 Frame = -2

Query: 231 RPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVDTARL 52
           +PDS T+V+++PA A++   R  K IHG VIR  L   V V TAL++MY+KCG + TAR 
Sbjct: 442 KPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRLLDDTVFVMTALVDMYAKCGAIHTARK 501

Query: 51  VFDKMRARNVVSWNSMI 1
           +F+ M  R+V++WNSMI
Sbjct: 502 LFNMMSERHVITWNSMI 518



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/81 (43%), Positives = 53/81 (65%)
 Frame = -2

Query: 243 EKGHRPDSITIVTILPACADVGFLRIGKCIHGFVIRANLGSLVNVSTALMNMYSKCGLVD 64
           ++G +P  +T++ +L ACAD G L  GK +H  V    L S V+V  +L++MYSKC  VD
Sbjct: 337 DEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVD 396

Query: 63  TARLVFDKMRARNVVSWNSMI 1
            A  +F+ ++ R +VSWN+MI
Sbjct: 397 FAANLFENLQNRTLVSWNAMI 417