BLASTX nr result
ID: Coptis25_contig00032841
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00032841 (974 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ... 66 1e-08 ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF8... 66 1e-08 dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s... 66 1e-08 gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi... 66 1e-08 gb|AFK49306.1| unknown [Lotus japonicus] 65 2e-08 >gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide [Zea mays] Length = 146 Score = 66.2 bits (160), Expect = 1e-08 Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 4/158 (2%) Frame = -2 Query: 697 LCECTFIVTELAPVR---DNVTRIYARGQGYHPDTLLQLELNPETYSLDIGDKFTLLLTP 527 L E TF+VT L P D V+R+ AR + D +QL++ + Y + G+KF +++ P Sbjct: 5 LFEDTFVVTRLDPDGKKFDRVSRVEARSEQL--DMYMQLDVATDVYPMHAGEKFNMVIAP 62 Query: 526 IPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKYSVTATSNIEDTYPFRRGDAEVFGE 347 N +G P TGY G ++EY M G L K S EDT + E++ Sbjct: 63 TLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKIS-------EDTSSSQNAKVEMY-- 113 Query: 346 ACFGTLYDEGLVMKMKNIKSRNVLWE-GQSLSLLIKKV 236 A FG GL+M ++ S +E Q L LLI+KV Sbjct: 114 ASFG-----GLLMLLRGDPSTAASFELDQRLFLLIRKV 146 >ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF83949.1| unknown [Zea mays] gi|195607894|gb|ACG25777.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide [Zea mays] gi|195608506|gb|ACG26083.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide [Zea mays] gi|195611040|gb|ACG27350.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide [Zea mays] gi|195649823|gb|ACG44379.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide [Zea mays] gi|195653495|gb|ACG46215.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide [Zea mays] gi|238014148|gb|ACR38109.1| unknown [Zea mays] gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 1 [Zea mays] gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 2 [Zea mays] gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 3 [Zea mays] gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 4 [Zea mays] Length = 146 Score = 66.2 bits (160), Expect = 1e-08 Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 4/158 (2%) Frame = -2 Query: 697 LCECTFIVTELAPVR---DNVTRIYARGQGYHPDTLLQLELNPETYSLDIGDKFTLLLTP 527 L E TF+VT L P D V+R+ AR + D +QL++ + Y + G+KF +++ P Sbjct: 5 LFEDTFVVTRLDPDGKKFDRVSRVEARSEQL--DMYMQLDVATDVYPMHAGEKFNMVIAP 62 Query: 526 IPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKYSVTATSNIEDTYPFRRGDAEVFGE 347 N +G P TGY G ++EY M G L K S EDT + E++ Sbjct: 63 TLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKIS-------EDTSSSQNAKVEMY-- 113 Query: 346 ACFGTLYDEGLVMKMKNIKSRNVLWE-GQSLSLLIKKV 236 A FG GL+M ++ S +E Q L LLI+KV Sbjct: 114 ASFG-----GLLMLLRGDPSTAASFELDQRLFLLIRKV 146 >dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza sativa Japonica Group] Length = 396 Score = 65.9 bits (159), Expect = 1e-08 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 4/178 (2%) Frame = -2 Query: 757 PPSDDRKNFAEHPCRVNNMVLCECTFIVTELAPVR---DNVTRIYARGQGYHPDTLLQLE 587 PP RK EH L E F VT L P D V+RI AR + + D +QL+ Sbjct: 244 PPPPPRK-MVEH--------LFEDIFTVTRLDPDGKKFDRVSRIEARSEQF--DMYMQLD 292 Query: 586 LNPETYSLDIGDKFTLLLTPIPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKYSVTA 407 + E Y + GD+FT++L P N +G P TG+ G F+Y M G L K S Sbjct: 293 VATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKIS--- 349 Query: 406 TSNIEDTYPFRRGDAEVFGEACFGTLYDEGLVMKMKNIKSRNVLWE-GQSLSLLIKKV 236 ED+ + E++ A FG GL+M +K S +E Q L LLI+KV Sbjct: 350 ----EDSSSGQATKVEIY--ASFG-----GLLMMLKGDPSSAASFELDQRLFLLIRKV 396 >gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group] gi|125598367|gb|EAZ38147.1| hypothetical protein OsJ_22498 [Oryza sativa Japonica Group] Length = 191 Score = 65.9 bits (159), Expect = 1e-08 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 4/178 (2%) Frame = -2 Query: 757 PPSDDRKNFAEHPCRVNNMVLCECTFIVTELAPVR---DNVTRIYARGQGYHPDTLLQLE 587 PP RK EH L E F VT L P D V+RI AR + + D +QL+ Sbjct: 39 PPPPPRK-MVEH--------LFEDIFTVTRLDPDGKKFDRVSRIEARSEQF--DMYMQLD 87 Query: 586 LNPETYSLDIGDKFTLLLTPIPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKYSVTA 407 + E Y + GD+FT++L P N +G P TG+ G F+Y M G L K S Sbjct: 88 VATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKIS--- 144 Query: 406 TSNIEDTYPFRRGDAEVFGEACFGTLYDEGLVMKMKNIKSRNVLWE-GQSLSLLIKKV 236 ED+ + E++ A FG GL+M +K S +E Q L LLI+KV Sbjct: 145 ----EDSSSGQATKVEIY--ASFG-----GLLMMLKGDPSSAASFELDQRLFLLIRKV 191 >gb|AFK49306.1| unknown [Lotus japonicus] Length = 144 Score = 65.1 bits (157), Expect = 2e-08 Identities = 58/160 (36%), Positives = 76/160 (47%), Gaps = 5/160 (3%) Frame = -2 Query: 700 VLCECTFIVTELAP----VRDNVTRIYARGQGYHPDTLLQLELNPETYSLDIGDKFTLLL 533 +L + F V +L P + + VTRI AR + + D + L++N E Y L +G KF LLL Sbjct: 4 ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERF--DMFMHLDINSELYPLKVGQKFALLL 61 Query: 532 TPIPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKYSVTATSNIEDTYPFRRGDAEVF 353 P NP+G P TGY G +FEY M G L K S + R AE+ Sbjct: 62 VPTLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGS----------GREKAEL- 110 Query: 352 GEACFGTLYDEGLVMKMKNIKSR-NVLWEGQSLSLLIKKV 236 FG GL+M MK S N Q L LL++KV Sbjct: 111 -NISFG-----GLLMMMKGDHSHCNKFELDQRLYLLMRKV 144