BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032841
         (974 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ...    66   1e-08
ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF8...    66   1e-08
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...    66   1e-08
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...    66   1e-08
gb|AFK49306.1| unknown [Lotus japonicus]                               65   2e-08

>gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
           [Zea mays]
          Length = 146

 Score = 66.2 bits (160), Expect = 1e-08
 Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
 Frame = -2

Query: 697 LCECTFIVTELAPVR---DNVTRIYARGQGYHPDTLLQLELNPETYSLDIGDKFTLLLTP 527
           L E TF+VT L P     D V+R+ AR +    D  +QL++  + Y +  G+KF +++ P
Sbjct: 5   LFEDTFVVTRLDPDGKKFDRVSRVEARSEQL--DMYMQLDVATDVYPMHAGEKFNMVIAP 62

Query: 526 IPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKYSVTATSNIEDTYPFRRGDAEVFGE 347
             N +G P TGY    G      ++EY M G L K S       EDT   +    E++  
Sbjct: 63  TLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKIS-------EDTSSSQNAKVEMY-- 113

Query: 346 ACFGTLYDEGLVMKMKNIKSRNVLWE-GQSLSLLIKKV 236
           A FG     GL+M ++   S    +E  Q L LLI+KV
Sbjct: 114 ASFG-----GLLMLLRGDPSTAASFELDQRLFLLIRKV 146


>ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF83949.1| unknown [Zea
           mays] gi|195607894|gb|ACG25777.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195608506|gb|ACG26083.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195611040|gb|ACG27350.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195649823|gb|ACG44379.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195653495|gb|ACG46215.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|238014148|gb|ACR38109.1| unknown [Zea mays]
           gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 1 [Zea mays]
           gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 2 [Zea mays]
           gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 3 [Zea mays]
           gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 4 [Zea mays]
          Length = 146

 Score = 66.2 bits (160), Expect = 1e-08
 Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
 Frame = -2

Query: 697 LCECTFIVTELAPVR---DNVTRIYARGQGYHPDTLLQLELNPETYSLDIGDKFTLLLTP 527
           L E TF+VT L P     D V+R+ AR +    D  +QL++  + Y +  G+KF +++ P
Sbjct: 5   LFEDTFVVTRLDPDGKKFDRVSRVEARSEQL--DMYMQLDVATDVYPMHAGEKFNMVIAP 62

Query: 526 IPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKYSVTATSNIEDTYPFRRGDAEVFGE 347
             N +G P TGY    G      ++EY M G L K S       EDT   +    E++  
Sbjct: 63  TLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKIS-------EDTSSSQNAKVEMY-- 113

Query: 346 ACFGTLYDEGLVMKMKNIKSRNVLWE-GQSLSLLIKKV 236
           A FG     GL+M ++   S    +E  Q L LLI+KV
Sbjct: 114 ASFG-----GLLMLLRGDPSTAASFELDQRLFLLIRKV 146


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
 Frame = -2

Query: 757 PPSDDRKNFAEHPCRVNNMVLCECTFIVTELAPVR---DNVTRIYARGQGYHPDTLLQLE 587
           PP   RK   EH        L E  F VT L P     D V+RI AR + +  D  +QL+
Sbjct: 244 PPPPPRK-MVEH--------LFEDIFTVTRLDPDGKKFDRVSRIEARSEQF--DMYMQLD 292

Query: 586 LNPETYSLDIGDKFTLLLTPIPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKYSVTA 407
           +  E Y +  GD+FT++L P  N +G P TG+    G       F+Y M G L K S   
Sbjct: 293 VATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKIS--- 349

Query: 406 TSNIEDTYPFRRGDAEVFGEACFGTLYDEGLVMKMKNIKSRNVLWE-GQSLSLLIKKV 236
               ED+   +    E++  A FG     GL+M +K   S    +E  Q L LLI+KV
Sbjct: 350 ----EDSSSGQATKVEIY--ASFG-----GLLMMLKGDPSSAASFELDQRLFLLIRKV 396


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
 Frame = -2

Query: 757 PPSDDRKNFAEHPCRVNNMVLCECTFIVTELAPVR---DNVTRIYARGQGYHPDTLLQLE 587
           PP   RK   EH        L E  F VT L P     D V+RI AR + +  D  +QL+
Sbjct: 39  PPPPPRK-MVEH--------LFEDIFTVTRLDPDGKKFDRVSRIEARSEQF--DMYMQLD 87

Query: 586 LNPETYSLDIGDKFTLLLTPIPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKYSVTA 407
           +  E Y +  GD+FT++L P  N +G P TG+    G       F+Y M G L K S   
Sbjct: 88  VATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKIS--- 144

Query: 406 TSNIEDTYPFRRGDAEVFGEACFGTLYDEGLVMKMKNIKSRNVLWE-GQSLSLLIKKV 236
               ED+   +    E++  A FG     GL+M +K   S    +E  Q L LLI+KV
Sbjct: 145 ----EDSSSGQATKVEIY--ASFG-----GLLMMLKGDPSSAASFELDQRLFLLIRKV 191


>gb|AFK49306.1| unknown [Lotus japonicus]
          Length = 144

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 58/160 (36%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
 Frame = -2

Query: 700 VLCECTFIVTELAP----VRDNVTRIYARGQGYHPDTLLQLELNPETYSLDIGDKFTLLL 533
           +L +  F V +L P    + + VTRI AR + +  D  + L++N E Y L +G KF LLL
Sbjct: 4   ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERF--DMFMHLDINSELYPLKVGQKFALLL 61

Query: 532 TPIPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKYSVTATSNIEDTYPFRRGDAEVF 353
            P  NP+G P TGY   G       +FEY M G L K S  +           R  AE+ 
Sbjct: 62  VPTLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGS----------GREKAEL- 110

Query: 352 GEACFGTLYDEGLVMKMKNIKSR-NVLWEGQSLSLLIKKV 236
               FG     GL+M MK   S  N     Q L LL++KV
Sbjct: 111 -NISFG-----GLLMMMKGDHSHCNKFELDQRLYLLMRKV 144