BLASTX nr result

ID: Coptis25_contig00032837 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032837
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002330309.1| predicted protein [Populus trichocarpa] gi|2...    56   4e-06

>ref|XP_002330309.1| predicted protein [Populus trichocarpa] gi|222871344|gb|EEF08475.1|
           predicted protein [Populus trichocarpa]
          Length = 321

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
 Frame = +2

Query: 5   ESVGLPIVEKHRHSRTYAEWRQLVTARTRQTKAIQAGNEFESENPFCRVVMGETYITKAF 184
           ++V L        S T    R+ VT   ++ + I+A + F S+NPF RV++  +Y+ + F
Sbjct: 170 QNVKLKSTHVRNTSETLTRRRRAVTPEEKE-RTIRAAHMFRSDNPFFRVILRPSYVYRGF 228

Query: 185 -MNLPCKFVRSF--TRTSFNDRRIKRKLNVRLLVSDGRMWLVTLTCRRNKAYFSTGW 346
            +++P  F R+F  T T F          V L VSDG+ W V  + +  KA    GW
Sbjct: 229 LLHIPSSFARTFLNTVTGF----------VTLQVSDGKQWPVRCSFKDGKAKLGQGW 275


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