BLASTX nr result
ID: Coptis25_contig00032823
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00032823
(256 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat... 127 1e-27
emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera] 127 1e-27
ref|XP_002302206.1| predicted protein [Populus trichocarpa] gi|2... 117 8e-25
emb|CBI19925.3| unnamed protein product [Vitis vinifera] 110 2e-22
ref|XP_002520265.1| pentatricopeptide repeat-containing protein,... 108 4e-22
>ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 127 bits (319), Expect = 1e-27
Identities = 63/85 (74%), Positives = 73/85 (85%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRMDKVSLASVISACAS 77
AR +FDTMP++SLISWNSMIVG++QN PIEAL+LFCEM +L LRMDK SLA VISACAS
Sbjct: 390 ARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACAS 449
Query: 76 LCSLRVGEQIFARITVAGLECDQII 2
+ SL +GEQIFAR T+ GLE DQII
Sbjct: 450 ISSLELGEQIFARATIIGLEFDQII 474
Score = 64.7 bits (156), Expect = 8e-09
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRM---DKVSLASVISA 86
AR +F+ MP ++ I+WNSMI GY NG P EA+ LF ++ L D LA+V+ A
Sbjct: 123 ARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGA 182
Query: 85 CASLCSLRVGEQIFARITVAGLECDQII 2
C +L +L G+QI ARI V +E D ++
Sbjct: 183 CTNLGALDCGKQIHARIVVDEVEFDSVL 210
Score = 59.3 bits (142), Expect = 3e-07
Identities = 34/85 (40%), Positives = 47/85 (55%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRMDKVSLASVISACAS 77
AR +F N ++ WNSMI GY N +EAL LF M R ++ D + ASV+SAC++
Sbjct: 258 ARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACST 317
Query: 76 LCSLRVGEQIFARITVAGLECDQII 2
L + G Q+ A + G D II
Sbjct: 318 LGIIDQGIQVHAHVYKVGFTNDIII 342
>emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
Length = 1796
Score = 127 bits (319), Expect = 1e-27
Identities = 63/85 (74%), Positives = 73/85 (85%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRMDKVSLASVISACAS 77
AR +FDTMP++SLISWNSMIVG++QN PIEAL+LFCEM +L LRMDK SLA VISACAS
Sbjct: 390 ARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACAS 449
Query: 76 LCSLRVGEQIFARITVAGLECDQII 2
+ SL +GEQIFAR T+ GLE DQII
Sbjct: 450 ISSLELGEQIFARATIIGLEFDQII 474
Score = 64.7 bits (156), Expect = 8e-09
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRM---DKVSLASVISA 86
AR +F+ MP ++ I+WNSMI GY NG P EA+ LF ++ L D LA+V+ A
Sbjct: 123 ARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGA 182
Query: 85 CASLCSLRVGEQIFARITVAGLECDQII 2
C +L +L G+QI ARI V +E D ++
Sbjct: 183 CTNLGALDCGKQIHARIVVDEVEFDSVL 210
Score = 59.3 bits (142), Expect = 3e-07
Identities = 34/85 (40%), Positives = 47/85 (55%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRMDKVSLASVISACAS 77
AR +F N ++ WNSMI GY N +EAL LF M R ++ D + ASV+SAC++
Sbjct: 258 ARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACST 317
Query: 76 LCSLRVGEQIFARITVAGLECDQII 2
L + G Q+ A + G D II
Sbjct: 318 LGIIDQGIQVHAHVYKVGFTNDIII 342
Score = 57.0 bits (136), Expect = 2e-06
Identities = 30/85 (35%), Positives = 48/85 (56%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRMDKVSLASVISACAS 77
AR VFD MP R ++SWN+MI GY GL +A F EM + +R + ++++S +S
Sbjct: 795 ARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSS 854
Query: 76 LCSLRVGEQIFARITVAGLECDQII 2
C G+QI A + G++ ++
Sbjct: 855 ACR---GKQIHASMIRNGVDLSNVV 876
>ref|XP_002302206.1| predicted protein [Populus trichocarpa] gi|222843932|gb|EEE81479.1|
predicted protein [Populus trichocarpa]
Length = 681
Score = 117 bits (294), Expect = 8e-25
Identities = 55/85 (64%), Positives = 73/85 (85%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRMDKVSLASVISACAS 77
A+ +F+TMP++SLISWNSMIVG +QNG P+EAL+LFC M +L+LRM++ +L SVISACAS
Sbjct: 389 AKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACAS 448
Query: 76 LCSLRVGEQIFARITVAGLECDQII 2
+ SL +GEQIFAR TV GL+ D++I
Sbjct: 449 ISSLELGEQIFARATVVGLDSDEVI 473
Score = 68.2 bits (165), Expect = 7e-10
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELR---MDKVSLASVISA 86
AR +F+ MPNR+ + WNSMI Y +NG P EA+ LF E+ L D LA+VI A
Sbjct: 122 ARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGA 181
Query: 85 CASLCSLRVGEQIFARITVAGLECDQII 2
C L ++ G+QI ARI + +E D ++
Sbjct: 182 CTDLGEIQCGKQIHARILIDNMELDSVL 209
Score = 68.2 bits (165), Expect = 7e-10
Identities = 34/85 (40%), Positives = 52/85 (61%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRMDKVSLASVISACAS 77
AR F N ++ WNS+I GY N IEA LF +M + L++D +LA+++SAC+S
Sbjct: 257 ARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSS 316
Query: 76 LCSLRVGEQIFARITVAGLECDQII 2
LC+ + G+Q+ A GL CD ++
Sbjct: 317 LCNSQHGKQMHAYACKVGLICDNVV 341
Score = 55.8 bits (133), Expect = 4e-06
Identities = 27/57 (47%), Positives = 36/57 (63%)
Frame = -1
Query: 253 RCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRMDKVSLASVISAC 83
R +FDTM ISWNSM++GY NG +EAL LF EM +R +++ V+SAC
Sbjct: 491 RKLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSAC 547
>emb|CBI19925.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 110 bits (274), Expect = 2e-22
Identities = 55/73 (75%), Positives = 62/73 (84%)
Frame = -1
Query: 220 LISWNSMIVGYTQNGLPIEALNLFCEMYRLELRMDKVSLASVISACASLCSLRVGEQIFA 41
LISWNSMIVG++QN PIEAL+LFCEM +L LRMDK SLA VISACAS+ SL +GEQIFA
Sbjct: 417 LISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFA 476
Query: 40 RITVAGLECDQII 2
R T+ GLE DQII
Sbjct: 477 RATIIGLEFDQII 489
Score = 64.7 bits (156), Expect = 8e-09
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRM---DKVSLASVISA 86
AR +F+ MP ++ I+WNSMI GY NG P EA+ LF ++ L D LA+V+ A
Sbjct: 159 ARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGA 218
Query: 85 CASLCSLRVGEQIFARITVAGLECDQII 2
C +L +L G+QI ARI V +E D ++
Sbjct: 219 CTNLGALDCGKQIHARIVVDEVEFDSVL 246
Score = 59.3 bits (142), Expect = 3e-07
Identities = 34/85 (40%), Positives = 47/85 (55%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRMDKVSLASVISACAS 77
AR +F N ++ WNSMI GY N +EAL LF M R ++ D + ASV+SAC++
Sbjct: 294 ARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACST 353
Query: 76 LCSLRVGEQIFARITVAGLECDQII 2
L + G Q+ A + G D II
Sbjct: 354 LGIIDQGIQVHAHVYKVGFTNDIII 378
>ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540484|gb|EEF42051.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 681
Score = 108 bits (271), Expect = 4e-22
Identities = 51/85 (60%), Positives = 69/85 (81%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRMDKVSLASVISACAS 77
A+ +F+TMP++SLISWNS+IVG QN P+EAL++F +M +L+LRMD+ SLASVISACA
Sbjct: 390 AKNIFETMPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACAC 449
Query: 76 LCSLRVGEQIFARITVAGLECDQII 2
+ SL +GEQ+FAR + GLE DQ +
Sbjct: 450 ISSLELGEQVFARAIITGLESDQAV 474
Score = 68.2 bits (165), Expect = 7e-10
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Frame = -1
Query: 256 ARCVFDTMPNRSLISWNSMIVGYTQNGLPIEALNLFCEMYRLELRM---DKVSLASVISA 86
A+ +F+ MP R+ ++WNSMI GY +NG EA+ LF E+ L D LASVI A
Sbjct: 123 AKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGA 182
Query: 85 CASLCSLRVGEQIFARITVAGLECDQII 2
CA L ++ G+Q+ ARI + +E D ++
Sbjct: 183 CADLGAIEYGKQVHARILMDDVELDSVL 210