BLASTX nr result
ID: Coptis25_contig00032808
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00032808
(882 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002311390.1| predicted protein [Populus trichocarpa] gi|2... 398 e-109
ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi... 254 1e-65
ref|NP_193619.1| pentatricopeptide repeat-containing protein [Ar... 251 2e-64
ref|XP_002867972.1| pentatricopeptide repeat-containing protein ... 246 4e-63
emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera] 241 2e-61
>ref|XP_002311390.1| predicted protein [Populus trichocarpa] gi|222851210|gb|EEE88757.1|
predicted protein [Populus trichocarpa]
Length = 594
Score = 398 bits (1023), Expect = e-109
Identities = 189/291 (64%), Positives = 241/291 (82%)
Frame = -2
Query: 881 RDAFLVYVQMVCEEECVLYPDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSW 702
R+AF Y +M+C++ V YP+DFTFT+VF+ACSK GVFEGKQAHAQM+K P +FG HSW
Sbjct: 115 REAFAFYSRMLCDQRYV-YPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSW 173
Query: 701 NSLMDFYVKSGEMVSVVQRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCRDT 522
NSL+DFY K GE+ VV+RVFD IE PD+VSWN L++GYVKSG +DE R+FDEMP RD
Sbjct: 174 NSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDV 233
Query: 521 VSWTMMLVGCVNAGLLSEARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVV 342
VSWT+MLVG +AG LSEA +FDEMP+RN+VSWSA+I GY++ GC+ +AL LFKEMQV
Sbjct: 234 VSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVA 293
Query: 341 GVLADKVMLTSVLSACASLGALDQGCWIHSYIDKHGIEVDAHLSTALVDMYSKCGRVEVA 162
V D+V++T++LSACA LGALDQG W+H YIDKHGI+VDAHLSTAL+DMYSKCGR+++A
Sbjct: 294 KVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMA 353
Query: 161 LDVFWRAPDKKVFLWNSILGGLAMHSRGKEALTLFSEMLDGQIMPNEITFI 9
VF DKKVF+W+S++GGLAMHS G++A+ LF++M++ I P+EIT+I
Sbjct: 354 WKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYI 404
>ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 254 bits (650), Expect = 1e-65
Identities = 132/291 (45%), Positives = 178/291 (61%)
Frame = -2
Query: 875 AFLVYVQMVCEEECVLYPDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNS 696
A ++ QM+ + PD +TFTF +C GV EG+Q H ++K + N+
Sbjct: 92 ALTIFHQML---HASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNT 148
Query: 695 LMDFYVKSGEMVSVVQRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCRDTVS 516
L+ Y G + + + D + D+VSWN+LL Y + G ++ +FDEM R+ S
Sbjct: 149 LIHLYASCG-CIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVES 207
Query: 515 WTMMLVGCVNAGLLSEARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGV 336
W M+ G V GLL EAR VF E P +NVVSW+AMI+GY G + E L LF++MQ GV
Sbjct: 208 WNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGV 267
Query: 335 LADKVMLTSVLSACASLGALDQGCWIHSYIDKHGIEVDAHLSTALVDMYSKCGRVEVALD 156
D L SVLSACA +GAL QG W+H+YIDK+GI +D ++TALVDMYSKCG +E AL+
Sbjct: 268 KPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALE 327
Query: 155 VFWRAPDKKVFLWNSILGGLAMHSRGKEALTLFSEMLDGQIMPNEITFICV 3
VF K + WNSI+ GL+ H G+ AL +FSEML PNE+TF+CV
Sbjct: 328 VFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCV 378
Score = 93.6 bits (231), Expect = 5e-17
Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 41/263 (15%)
Frame = -2
Query: 707 SWNSLMDFYVKSGEMVSVVQRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCR 528
SWN ++ YV G ++ +RVF ++VSWN+++ GY +GR E +F++M
Sbjct: 207 SWNFMISGYVGVG-LLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHA 265
Query: 527 ----DTVSWTMMLVGCVNAGLLSEARYV-------------------------------- 456
D + +L C + G LS+ +V
Sbjct: 266 GVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKA 325
Query: 455 ---FDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLADKVMLTSVLSACASL 285
F+ +++ +W+++ISG G + AL +F EM V G ++V VLSAC+
Sbjct: 326 LEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRA 385
Query: 284 GALDQGC-WIHSYIDKHGIEVDAHLSTALVDMYSKCGRVEVALDVFWRAPDKKV-FLWNS 111
G LD+G + + HGI+ +VD+ + G +E A ++ + P K+ +W S
Sbjct: 386 GLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWES 445
Query: 110 ILGGLAMHSRGKEALTLFSEMLD 42
+LG H + A + ++L+
Sbjct: 446 LLGACRNHGNVELAERVAQKLLE 468
Score = 80.1 bits (196), Expect = 6e-13
Identities = 43/152 (28%), Positives = 72/152 (47%)
Frame = -2
Query: 488 NAGLLSEARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLADKVMLTS 309
+A + A +F +P N W+ +I Y + AL +F +M VL DK T
Sbjct: 54 HAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTF 113
Query: 308 VLSACASLGALDQGCWIHSYIDKHGIEVDAHLSTALVDMYSKCGRVEVALDVFWRAPDKK 129
L +C S +++G IH ++ K G+ D + L+ +Y+ CG +E A + R ++
Sbjct: 114 ALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERD 173
Query: 128 VFLWNSILGGLAMHSRGKEALTLFSEMLDGQI 33
V WN++L A + A LF EM + +
Sbjct: 174 VVSWNALLSAYAERGLMELACHLFDEMTERNV 205
>ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g18840 gi|5738365|emb|CAA16741.2| putative protein
[Arabidopsis thaliana] gi|7268678|emb|CAB78886.1|
putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 251 bits (640), Expect = 2e-64
Identities = 130/277 (46%), Positives = 176/277 (63%), Gaps = 1/277 (0%)
Frame = -2
Query: 830 LYPDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKSGEMVSVV 651
++PD ++FTFV AC+ G EG+Q H +K + N+L++ Y +SG +
Sbjct: 136 VFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYF-EIA 194
Query: 650 QRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCRDTVSWTMMLVGCVNAGLLS 471
++V D + D VSWNSLL Y++ G VDE +FDEM R+ SW M+ G AGL+
Sbjct: 195 RKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVK 254
Query: 470 EARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGV-LADKVMLTSVLSAC 294
EA+ VFD MP R+VVSW+AM++ Y GC+ E L +F +M D L SVLSAC
Sbjct: 255 EAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSAC 314
Query: 293 ASLGALDQGCWIHSYIDKHGIEVDAHLSTALVDMYSKCGRVEVALDVFWRAPDKKVFLWN 114
ASLG+L QG W+H YIDKHGIE++ L+TALVDMYSKCG+++ AL+VF + V WN
Sbjct: 315 ASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWN 374
Query: 113 SILGGLAMHSRGKEALTLFSEMLDGQIMPNEITFICV 3
SI+ L++H GK+AL +FSEM+ PN ITFI V
Sbjct: 375 SIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 411
Score = 73.6 bits (179), Expect = 6e-11
Identities = 44/143 (30%), Positives = 67/143 (46%)
Frame = -2
Query: 476 LSEARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLADKVMLTSVLSA 297
+S A + + + N + +++I Y + AL +F+EM + V DK T VL A
Sbjct: 90 VSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKA 149
Query: 296 CASLGALDQGCWIHSYIDKHGIEVDAHLSTALVDMYSKCGRVEVALDVFWRAPDKKVFLW 117
CA+ ++G IH K G+ D + LV++Y + G E+A V R P + W
Sbjct: 150 CAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSW 209
Query: 116 NSILGGLAMHSRGKEALTLFSEM 48
NS+L EA LF EM
Sbjct: 210 NSLLSAYLEKGLVDEARALFDEM 232
>ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297313808|gb|EFH44231.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 535
Score = 246 bits (629), Expect = 4e-63
Identities = 128/277 (46%), Positives = 175/277 (63%), Gaps = 1/277 (0%)
Frame = -2
Query: 830 LYPDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNSLMDFYVKSGEMVSVV 651
++PD ++FTFV AC+ G EG+Q H +K + N+L++ Y +SG +
Sbjct: 106 VFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYF-EIA 164
Query: 650 QRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCRDTVSWTMMLVGCVNAGLLS 471
++V D + D VSWNSLL Y+ G V+E +FDEM R+ SW M+ G AGL+
Sbjct: 165 RKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVK 224
Query: 470 EARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEM-QVVGVLADKVMLTSVLSAC 294
EAR VFD MP ++VVSW+AM++ Y GC+ E L +F M D L +VLSAC
Sbjct: 225 EAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSAC 284
Query: 293 ASLGALDQGCWIHSYIDKHGIEVDAHLSTALVDMYSKCGRVEVALDVFWRAPDKKVFLWN 114
ASLG+L QG W+H YIDKHGIE++ ++TALVDMYSKCG+++ AL+VF + V WN
Sbjct: 285 ASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWN 344
Query: 113 SILGGLAMHSRGKEALTLFSEMLDGQIMPNEITFICV 3
SI+ GL++H GK+AL +FSEM+ PN ITFI V
Sbjct: 345 SIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 381
Score = 84.0 bits (206), Expect = 4e-14
Identities = 66/264 (25%), Positives = 114/264 (43%), Gaps = 42/264 (15%)
Frame = -2
Query: 707 SWNSLMDFYVKSGEMVSVVQRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVF-----D 543
SWN ++ Y +G +V + VFD + D+VSWN+++ Y G +E VF D
Sbjct: 209 SWNFMISGYAAAG-LVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDD 267
Query: 542 EMPCRDTVSWTMMLVGCVNAGLLSEARYV------------------------------- 456
D + +L C + G LS+ +V
Sbjct: 268 SAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDK 327
Query: 455 ----FDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLADKVMLTSVLSACAS 288
F + +R+V +W+++I+G G K+AL +F EM G + + VLSAC
Sbjct: 328 ALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNH 387
Query: 287 LGALDQGCWIHSYIDK-HGIEVDAHLSTALVDMYSKCGRVEVALDVFWRAP-DKKVFLWN 114
+G LDQ + ++ +GIE +VD+ + G+ E A ++ P D+ L
Sbjct: 388 VGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLE 447
Query: 113 SILGGLAMHSRGKEALTLFSEMLD 42
S+LG + ++A + + +L+
Sbjct: 448 SLLGACKRFGKLEQAERIANRLLE 471
Score = 70.9 bits (172), Expect = 4e-10
Identities = 42/143 (29%), Positives = 67/143 (46%)
Frame = -2
Query: 476 LSEARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLADKVMLTSVLSA 297
+S A + + + N + +++I Y + AL +F+EM + V DK T VL A
Sbjct: 60 VSYAHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKA 119
Query: 296 CASLGALDQGCWIHSYIDKHGIEVDAHLSTALVDMYSKCGRVEVALDVFWRAPDKKVFLW 117
CA+ ++G IH K + D + L+++Y + G E+A V R P + W
Sbjct: 120 CAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSW 179
Query: 116 NSILGGLAMHSRGKEALTLFSEM 48
NS+L +EA LF EM
Sbjct: 180 NSLLSAYLDKGLVEEARALFDEM 202
>emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 241 bits (614), Expect = 2e-61
Identities = 127/292 (43%), Positives = 184/292 (63%), Gaps = 1/292 (0%)
Frame = -2
Query: 875 AFLVYVQMVCEEECVLYPDDFTFTFVFAACSKLLGVFEGKQAHAQMVKCPVKFGTHSWNS 696
A L+Y +MV P+ +T+ V ACS V EG Q HA +VK + H +S
Sbjct: 122 AILLYYEMVVAHS---RPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSS 178
Query: 695 LMDFYVKSGEMVSVVQRVFDGIENPDIVSWNSLLDGYVKSGRVDECTRVFDEMPCRDTVS 516
+ Y G +V + + D D V WN+++DGY++ G V+ +F+ MP R +S
Sbjct: 179 AIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIS 238
Query: 515 -WTMMLVGCVNAGLLSEARYVFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVG 339
W M+ G G++ AR FDEM ER+ +SWSAMI GY+++GC+ EAL +F +MQ
Sbjct: 239 TWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEK 298
Query: 338 VLADKVMLTSVLSACASLGALDQGCWIHSYIDKHGIEVDAHLSTALVDMYSKCGRVEVAL 159
+ K +L SVLSACA+LGALDQG WIH+Y ++ I++D L T+LVDMY+KCGR+++A
Sbjct: 299 IRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAW 358
Query: 158 DVFWRAPDKKVFLWNSILGGLAMHSRGKEALTLFSEMLDGQIMPNEITFICV 3
+VF + +K+V WN+++GGLAMH R ++A+ LFS+M I PNEITF+ V
Sbjct: 359 EVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGV 407
Score = 65.9 bits (159), Expect = 1e-08
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 1/140 (0%)
Frame = -2
Query: 458 VFDEMPERNVVSWSAMISGYVKDGCWKEALGLFKEMQVVGVLADKVMLTSVLSACASLGA 279
VFD + + NV W+ MI +++ +A+ L+ EM V +K +VL AC+ G
Sbjct: 94 VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGV 153
Query: 278 LDQGCWIHSYIDKHGIEVDAHLSTALVDMYSKCGR-VEVALDVFWRAPDKKVFLWNSILG 102
+ +G +H+++ KHG+ D H+ ++ + MY+ GR VE + + + WN+++
Sbjct: 154 VAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMID 213
Query: 101 GLAMHSRGKEALTLFSEMLD 42
G + A LF M D
Sbjct: 214 GYLRFGEVEAARELFEGMPD 233