BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032798
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containi...   112   3e-23
emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]   112   3e-23
ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containi...   105   3e-21
ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containi...    99   5e-21

>ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
           gi|297745544|emb|CBI40709.3| unnamed protein product
           [Vitis vinifera]
          Length = 695

 Score =  112 bits (280), Expect = 3e-23
 Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 6/104 (5%)
 Frame = -3

Query: 296 NNDLTSLHNRKYDFTPLLNYXXXXXXXXXXXXXXXLNP------TELHLVESYKAVPAQL 135
           + DL S+ NR+YDFTPLL +                 P      TE  LVESY+AVPA L
Sbjct: 60  SGDLNSVPNRRYDFTPLLRFLSNSESDSDSGAEVESPPPTSLDFTEFQLVESYRAVPAPL 119

Query: 134 WHSLLKSLCSSTPTTLETAYSLVTWLQKHNLCYSYELFYSILIH 3
           WHSLLKSLCS + +++ TAYSLVTWL++HNLC+SYEL YSILIH
Sbjct: 120 WHSLLKSLCSDS-SSIGTAYSLVTWLERHNLCFSYELLYSILIH 162


>emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score =  112 bits (280), Expect = 3e-23
 Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 6/104 (5%)
 Frame = -3

Query: 296 NNDLTSLHNRKYDFTPLLNYXXXXXXXXXXXXXXXLNP------TELHLVESYKAVPAQL 135
           + DL S+ NR+YDFTPLL +                 P      TE  LVESY+AVPA L
Sbjct: 131 SGDLNSVPNRRYDFTPLLRFLSNSESDSDSGAEVESPPPTSLDFTEFQLVESYRAVPAPL 190

Query: 134 WHSLLKSLCSSTPTTLETAYSLVTWLQKHNLCYSYELFYSILIH 3
           WHSLLKSLCS + +++ TAYSLVTWL++HNLC+SYEL YSILIH
Sbjct: 191 WHSLLKSLCSDS-SSIGTAYSLVTWLERHNLCFSYELLYSILIH 233


>ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  107 bits (267), Expect = 1e-21
 Identities = 53/99 (53%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
 Frame = -3

Query: 293 NDLTSLHNRKYDFTPLLNYXXXXXXXXXXXXXXXLNPTELHLVESYKAVPAQLWHSLLKS 114
           +D+ SLHNR+YDFTPLL++                + TE  L ESY+AVPA LWH+ LKS
Sbjct: 52  DDILSLHNRRYDFTPLLSFLSTTSNSSPPTSL---DSTEFQLAESYRAVPAPLWHAFLKS 108

Query: 113 LC--SSTPTTLETAYSLVTWLQKHNLCYSYELFYSILIH 3
           LC  SS+ +++  AY++V+WLQKHNLC+SYEL YSILI+
Sbjct: 109 LCASSSSSSSIALAYAVVSWLQKHNLCFSYELLYSILIN 147


>ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score =  105 bits (263), Expect = 3e-21
 Identities = 53/101 (52%), Positives = 68/101 (67%), Gaps = 4/101 (3%)
 Frame = -3

Query: 293 NDLTSLHNRKYDFTPLLNYXXXXXXXXXXXXXXXL----NPTELHLVESYKAVPAQLWHS 126
           +D+ S HNR+YDFTPLL +                      TE  L ESY+AVPA LWH+
Sbjct: 64  DDILSFHNRRYDFTPLLTFLSNPSTTSDSDSNSTPPTSLGSTEFQLAESYRAVPAPLWHA 123

Query: 125 LLKSLCSSTPTTLETAYSLVTWLQKHNLCYSYELFYSILIH 3
           LLKSLCSS+ +++  AY++V+WLQKHNLC+SYEL YSILI+
Sbjct: 124 LLKSLCSSS-SSIALAYAVVSWLQKHNLCFSYELLYSILIN 163


>ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
           gi|449489420|ref|XP_004158306.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score = 99.4 bits (246), Expect(2) = 5e-21
 Identities = 53/119 (44%), Positives = 69/119 (57%), Gaps = 22/119 (18%)
 Frame = -3

Query: 293 NDLTSLHNRKYDFTPLLNYXXXXXXXXXXXXXXXL----------------------NPT 180
           ND  SL +R+YDFTPLL++                                      +PT
Sbjct: 70  NDPVSLQSRRYDFTPLLDFLSRSSAYPKFDSDSDSEVEFDSTFNSGSDSDTASPTSLDPT 129

Query: 179 ELHLVESYKAVPAQLWHSLLKSLCSSTPTTLETAYSLVTWLQKHNLCYSYELFYSILIH 3
           E  L E+Y+AVPA LWHSLLKSLCSS+ +++   Y++V+WLQ+HNLC+SYEL YSILIH
Sbjct: 130 EFQLAEAYRAVPAPLWHSLLKSLCSSS-SSIGLGYAVVSWLQRHNLCFSYELLYSILIH 187



 Score = 26.6 bits (57), Expect(2) = 5e-21
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 445 LHHHHLQYASTPTTTFSHYSHP 380
           LHHHH  + +T   +FS +S P
Sbjct: 25  LHHHHNPHIATTHLSFSFFSAP 46