BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032788
         (553 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    69   7e-10
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    67   2e-09
ref|XP_002304990.1| predicted protein [Populus trichocarpa] gi|2...    66   3e-09
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    65   7e-09
ref|XP_002524702.1| nuclease, putative [Ricinus communis] gi|223...    63   4e-08

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 68.6 bits (166), Expect = 7e-10
 Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
 Frame = -2

Query: 411 KQFCWIPPAPNIIKLNTDGAARGSPGPFGIGVAYRGHMGEFKLTMAKNIGVETNFKAECW 232
           ++  W+PP    +K+N DG+  GSP    IGV +R     F    A+NIG  T  +AE  
Sbjct: 241 REIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYS 300

Query: 231 AILEGIERAVEEWL-NLWV*TDFEAAATA--FSTDQLGSLQAR*NDCLNKLQGWK--ITT 67
           A +  IE+A E  L N+W+ TD      A  F+T     +  R ++CL   +  +   T 
Sbjct: 301 ACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRSIRSLCTH 360

Query: 66  IWREGNDTADLLSKIGAAL 10
           + REGN  AD L+K G  L
Sbjct: 361 VNREGNLVADALAKNGQGL 379


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 3/184 (1%)
 Frame = -2

Query: 543  KLYVRTQVRITGNLSKGISYNSPHESGILSY*NVNHRPKSAPKVKQFCWIPPAPNIIKLN 364
            K  + + + ++GN+S G   +S  +S IL   +V+ R +    +    W  P+P ++K+N
Sbjct: 969  KARIHSLIAMSGNVSTGKCLHS--DSAILEEFSVSPRHRKYKDIILVLWKNPSPPLLKVN 1026

Query: 363  TDGAARGSPGPFGIGVAYRGHMGEFKLTMAKNIGVETNFKAECWAILEGIERAVEE-WLN 187
            TDG+  G  G    G  +R   G F    + NIG+ + F AE  A +  +E A    W N
Sbjct: 1027 TDGSVVG--GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRN 1084

Query: 186  LWV*TDFEAAATAFSTDQLGSLQAR*NDCLNKLQGWKITT--IWREGNDTADLLSKIGAA 13
            LW+ +D  +A   FS   L     R      +  G ++ +  I  EGN  AD L+ +G  
Sbjct: 1085 LWLESDSTSALMIFSNSSLVQWLLRNRWHNAQRLGIQVISSHILHEGNRCADNLANMGHG 1144

Query: 12   LPES 1
            +  S
Sbjct: 1145 IQGS 1148


>ref|XP_002304990.1| predicted protein [Populus trichocarpa] gi|222847954|gb|EEE85501.1|
           predicted protein [Populus trichocarpa]
          Length = 202

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
 Frame = -2

Query: 399 WIPPAPNIIKLNTDGAARGSPGPFGIGVAYRGHMGEFKLTMAKNIGVETNFKAECWAILE 220
           W  P     KLN DG+ +G+ G   IG  +R H  EF L  A+ IG  T+  AE  A+  
Sbjct: 35  WKKPQIGWTKLNFDGSCKGTAGKASIGGVFRNHEAEFLLGYAEPIGGTTSTIAELAALRR 94

Query: 219 GIERAVEE-WLNLWV*TDFEAAATAF-STDQLGSLQAR-----*NDCLNKLQGWKITTIW 61
           G+E  +E  W N+W+  D ++         Q+   +A+      N  + +LQ   +T ++
Sbjct: 95  GLELVLENGWSNVWLEGDSKSLVDIIVKRKQVRCKEAQRQVSHINLIMPELQNCVVTHVF 154

Query: 60  REGNDTADLLSKIGAAL 10
           REGN  AD L++IG  L
Sbjct: 155 REGNRAADKLARIGHQL 171


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 65.1 bits (157), Expect = 7e-09
 Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
 Frame = -2

Query: 393 PPAPNIIKLNTDGAARGSPGPFGIGVAYRGHMGEFKLTMAKNIGVETNFKAECWAILEGI 214
           P     +K+N DG+A G+P     G  +R          A+NIG  T FKAE  A +  I
Sbjct: 5   PAVQGRVKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAI 64

Query: 213 ERAVEEWL-NLWV*TDFEAAATAFSTDQ--LGSLQAR*NDCLNKLQGWK--ITTIWREGN 49
           E+++E  L ++W+ TD +    AFS+ +     L+ R N+CL   Q  K   T I REGN
Sbjct: 65  EKSIEYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGN 124

Query: 48  DTADLLSKIGAAL 10
             AD L+K G +L
Sbjct: 125 AGADSLAKNGKSL 137


>ref|XP_002524702.1| nuclease, putative [Ricinus communis] gi|223536063|gb|EEF37721.1|
           nuclease, putative [Ricinus communis]
          Length = 201

 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
 Frame = -2

Query: 399 WIPPAPNIIKLNTDGAARGSPGPFGIGVAYRGHMGEFKLTMAKNIGVETNFKAECWAILE 220
           W  P     KLN DG+ +G  G   IG  +R H  EF L  A++IG  T+  AE  A+  
Sbjct: 34  WEKPQVGWTKLNFDGSCKGREGKGSIGGVFRNHKAEFLLGYAESIGRSTSTIAELAALRR 93

Query: 219 GIERAVEE-WLNLWV*TDFEAAATAF---STDQLGSLQAR*ND---CLNKLQGWKITTIW 61
           G+E  +E  W N+W+  D +            +   +Q   +D    + +L    ++ ++
Sbjct: 94  GLELVLENGWSNVWLEGDAKTLLEIIVKRRKVRCAQMQRHVSDINLIIPELDNCIVSHVY 153

Query: 60  REGNDTADLLSKIGAAL 10
           REGN  AD L++IG  L
Sbjct: 154 REGNRAADKLAQIGHQL 170