BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032660
         (690 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|2...   145   1e-32
ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis ly...   130   2e-28
ref|NP_001118682.1| RNA recognition motif-containing protein [Ar...   128   1e-27
ref|NP_188979.2| RNA recognition motif-containing protein [Arabi...   128   1e-27
gb|ABF59161.1| unknown protein [Arabidopsis thaliana]                  78   1e-12

>ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|222863522|gb|EEF00653.1|
            predicted protein [Populus trichocarpa]
          Length = 702

 Score =  145 bits (365), Expect = 1e-32
 Identities = 85/227 (37%), Positives = 130/227 (57%), Gaps = 2/227 (0%)
 Frame = -1

Query: 675  GPIDDIYFISSC--SDVYKDAYVRFKTKEGMRKALTNSSTVVGKYDVILEPVSPSTYTSN 502
            GPI  I  +SS   S+++ DA++ F+T++G+ KAL     ++   +  +        T++
Sbjct: 429  GPISKIEKVSSVKGSNLF-DAFLHFETRQGLHKALEKPEVLIKNSNAFIHD------TAS 481

Query: 501  RLIRPNLIGVCGIPPSFVKNPTRTVMVKGLPHNVSSHHLEETFSFSGARITAFFMGSSSS 322
            R+  PNLIG   I  + VK+PTRTV +K L  ++SSH L+E  SF  + I  F +G+SSS
Sbjct: 482  RISIPNLIGDIDISVALVKHPTRTVKIKQLTDDISSHQLKEALSFCRSGINVF-LGASSS 540

Query: 321  VXXXXXXXXXXXXXXXXACSIPISGSKLSVFRIDAPVTTIVRISNVAHGENSQNTIRKVC 142
                                + +SG +LS+FR+DAP TT+VRI N+      ++ +  +C
Sbjct: 541  NAYVEFESEDAKERALAKHFLQVSGKQLSIFRVDAPRTTVVRILNI--NPQCRSNVLTIC 598

Query: 141  KSYGKFKRLIRRSPGIYDVYYQETEWPNMVDILNSLNGQVVSGHQWI 1
            KS+GK  R+  R   I DVY++  EWPNM++ILNSLNG    G +W+
Sbjct: 599  KSFGKLWRMKLRHENIADVYFKIDEWPNMLNILNSLNGLEADGSRWV 645


>ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]
            gi|297329267|gb|EFH59686.1| nucleic acid binding protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 785

 Score =  130 bits (327), Expect = 2e-28
 Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 1/229 (0%)
 Frame = -1

Query: 684  SAFGPIDDIYFISSCSD-VYKDAYVRFKTKEGMRKALTNSSTVVGKYDVILEPVSPSTYT 508
            S FG +  +  I S    +YKDA + F+T   ++KAL      V   + ++E  S     
Sbjct: 505  SQFGAVLHVQEIPSFEGCIYKDALLTFETNTAVKKALEKGRVTVMNNNAVVEATSQEDMV 564

Query: 507  SNRLIRPNLIGVCGIPPSFVKNPTRTVMVKGLPHNVSSHHLEETFSFSGARITAFFMGSS 328
              R+  P+LIG   +P + VK P+RTV +  L H+ SS+ ++E   F  + I+ F +GSS
Sbjct: 565  E-RICIPDLIGDPDVPVALVKEPSRTVKIHPLTHDFSSNQIKEALKFCRSNISKFILGSS 623

Query: 327  SSVXXXXXXXXXXXXXXXXACSIPISGSKLSVFRIDAPVTTIVRISNVAHGENSQNTIRK 148
             +                   SI I  ++L + RID P TT+ RISN++  +++   +R 
Sbjct: 624  RTDAFVEFETEDGKERALAEHSISICNTQLFISRIDIPRTTVARISNLS--KSAMKDVRA 681

Query: 147  VCKSYGKFKRLIRRSPGIYDVYYQETEWPNMVDILNSLNGQVVSGHQWI 1
            +C  YG+ K++  R  G+ DV +  +EWPNM++ILNSLNG  + G + +
Sbjct: 682  LCVPYGQIKQVYIRGNGVVDVLFDVSEWPNMLNILNSLNGMGIDGKKLV 730


>ref|NP_001118682.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
            gi|332643237|gb|AEE76758.1| RNA recognition
            motif-containing protein [Arabidopsis thaliana]
          Length = 771

 Score =  128 bits (321), Expect = 1e-27
 Identities = 72/223 (32%), Positives = 118/223 (52%)
 Frame = -1

Query: 669  IDDIYFISSCSDVYKDAYVRFKTKEGMRKALTNSSTVVGKYDVILEPVSPSTYTSNRLIR 490
            + +I  I  C  +YKDA + F+T   ++KAL      V  Y+ ++E  S       R+  
Sbjct: 499  VQEIPSIEGC--IYKDALLTFETNTAVKKALKKGHVTVMNYNTVVEATSQEDMVE-RICI 555

Query: 489  PNLIGVCGIPPSFVKNPTRTVMVKGLPHNVSSHHLEETFSFSGARITAFFMGSSSSVXXX 310
            P+LIG   +P + VK P RTV +  L H+ SS+ ++E   F  + I+ F +GSS +    
Sbjct: 556  PDLIGDPDVPVALVKEPARTVKIHPLTHDFSSNQIKEALKFCRSNISKFTLGSSRTDAFV 615

Query: 309  XXXXXXXXXXXXXACSIPISGSKLSVFRIDAPVTTIVRISNVAHGENSQNTIRKVCKSYG 130
                           SI I  ++L + RID P T + RISN++  +++   +R +C  YG
Sbjct: 616  EFETEDGKERALAEHSISICNTQLFISRIDIPRTIVARISNLS--KSAMRDVRALCVPYG 673

Query: 129  KFKRLIRRSPGIYDVYYQETEWPNMVDILNSLNGQVVSGHQWI 1
            + + +  R  G+ DV++  +EWPNM+ ILNS+NG  + G + +
Sbjct: 674  QIRGVYIRGTGVADVFFDISEWPNMLAILNSMNGMEIDGKKLV 716


>ref|NP_188979.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
            gi|11994322|dbj|BAB02281.1| unnamed protein product
            [Arabidopsis thaliana] gi|332643236|gb|AEE76757.1| RNA
            recognition motif-containing protein [Arabidopsis
            thaliana]
          Length = 811

 Score =  128 bits (321), Expect = 1e-27
 Identities = 72/223 (32%), Positives = 118/223 (52%)
 Frame = -1

Query: 669  IDDIYFISSCSDVYKDAYVRFKTKEGMRKALTNSSTVVGKYDVILEPVSPSTYTSNRLIR 490
            + +I  I  C  +YKDA + F+T   ++KAL      V  Y+ ++E  S       R+  
Sbjct: 539  VQEIPSIEGC--IYKDALLTFETNTAVKKALKKGHVTVMNYNTVVEATSQEDMVE-RICI 595

Query: 489  PNLIGVCGIPPSFVKNPTRTVMVKGLPHNVSSHHLEETFSFSGARITAFFMGSSSSVXXX 310
            P+LIG   +P + VK P RTV +  L H+ SS+ ++E   F  + I+ F +GSS +    
Sbjct: 596  PDLIGDPDVPVALVKEPARTVKIHPLTHDFSSNQIKEALKFCRSNISKFTLGSSRTDAFV 655

Query: 309  XXXXXXXXXXXXXACSIPISGSKLSVFRIDAPVTTIVRISNVAHGENSQNTIRKVCKSYG 130
                           SI I  ++L + RID P T + RISN++  +++   +R +C  YG
Sbjct: 656  EFETEDGKERALAEHSISICNTQLFISRIDIPRTIVARISNLS--KSAMRDVRALCVPYG 713

Query: 129  KFKRLIRRSPGIYDVYYQETEWPNMVDILNSLNGQVVSGHQWI 1
            + + +  R  G+ DV++  +EWPNM+ ILNS+NG  + G + +
Sbjct: 714  QIRGVYIRGTGVADVFFDISEWPNMLAILNSMNGMEIDGKKLV 756


>gb|ABF59161.1| unknown protein [Arabidopsis thaliana]
          Length = 226

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 41/132 (31%), Positives = 71/132 (53%)
 Frame = -1

Query: 396 SHHLEETFSFSGARITAFFMGSSSSVXXXXXXXXXXXXXXXXACSIPISGSKLSVFRIDA 217
           S+ ++E   F  + I+ F +GSS +                   SI I  ++L + RID 
Sbjct: 42  SNQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGKERALAEHSISICNTQLFISRIDI 101

Query: 216 PVTTIVRISNVAHGENSQNTIRKVCKSYGKFKRLIRRSPGIYDVYYQETEWPNMVDILNS 37
           P T + RISN++  +++   +R +C  YG+ + +  R  G+ DV++  +EWPNM+ ILNS
Sbjct: 102 PRTIVARISNLS--KSAMRDVRALCVPYGQIRGVYIRGTGVADVFFDISEWPNMLAILNS 159

Query: 36  LNGQVVSGHQWI 1
           +NG  + G + +
Sbjct: 160 MNGMEIDGKKLV 171