BLASTX nr result
ID: Coptis25_contig00032616
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00032616
(317 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001054679.1| Os05g0153400 [Oryza sativa Japonica Group] g... 92 3e-17
ref|XP_002443467.1| hypothetical protein SORBIDRAFT_08g019910 [S... 89 4e-16
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi... 86 2e-15
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi... 86 2e-15
ref|XP_002299387.1| predicted protein [Populus trichocarpa] gi|2... 86 4e-15
>ref|NP_001054679.1| Os05g0153400 [Oryza sativa Japonica Group]
gi|52353594|gb|AAU44160.1| unknown protein [Oryza sativa
Japonica Group] gi|54287570|gb|AAV31314.1| unknown
protein [Oryza sativa Japonica Group]
gi|113578230|dbj|BAF16593.1| Os05g0153400 [Oryza sativa
Japonica Group] gi|215766042|dbj|BAG98270.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218196115|gb|EEC78542.1| hypothetical protein
OsI_18502 [Oryza sativa Indica Group]
gi|222630240|gb|EEE62372.1| hypothetical protein
OsJ_17161 [Oryza sativa Japonica Group]
Length = 507
Score = 92.4 bits (228), Expect = 3e-17
Identities = 51/100 (51%), Positives = 66/100 (66%), Gaps = 3/100 (3%)
Frame = +1
Query: 4 RDVVSWTSMIVGYTQHHRYKHSLDALRSMIAASVVPNGYSFSGALTACSRL--QALSQGQ 177
RDVVSWTS+I G+ Y+ SL LR M+ + VVPNGYS SGAL AC+ + AL+ G+
Sbjct: 82 RDVVSWTSLITGHAHQGLYQDSLALLRRMVISGVVPNGYSLSGALLACAGIGPGALAAGK 141
Query: 178 QIHAFVLTSGAL-PVDTVVQNSLLHMYLRCHCIEHARNLF 294
+IHA V+ VD VV+N +L MY RC I++AR LF
Sbjct: 142 EIHARVVKMSLHGSVDAVVENGVLDMYTRCGKIDYARKLF 181
Score = 76.3 bits (186), Expect = 3e-12
Identities = 38/101 (37%), Positives = 61/101 (60%)
Frame = +1
Query: 4 RDVVSWTSMIVGYTQHHRYKHSLDALRSMIAASVVPNGYSFSGALTACSRLQALSQGQQI 183
RD+V+W SM+ G + + + +L SM+++ V +G+SF+ ++ AC L L QG Q
Sbjct: 187 RDIVAWNSMMAGCLRSGQAEEALGLFSSMVSSGVDADGFSFAISVDACGELALLKQGMQA 246
Query: 184 HAFVLTSGALPVDTVVQNSLLHMYLRCHCIEHARNLFDSAM 306
HA V+ G D VV+NSL+ MY +C C++ A +F A+
Sbjct: 247 HARVI-RGGFDSDVVVRNSLVDMYAKCGCVDSAGLVFRDAL 286
>ref|XP_002443467.1| hypothetical protein SORBIDRAFT_08g019910 [Sorghum bicolor]
gi|241944160|gb|EES17305.1| hypothetical protein
SORBIDRAFT_08g019910 [Sorghum bicolor]
Length = 504
Score = 89.0 bits (219), Expect = 4e-16
Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Frame = +1
Query: 4 RDVVSWTSMIVGYTQHHRYKHSLDALRSMIAASVVPNGYSFSGALTACSRL--QALSQGQ 177
RDVVSWTS++ G+ ++ +L LR M+ + V PNGYS SG L AC+ + AL+ G+
Sbjct: 85 RDVVSWTSLVTGHAHQGLHRDALALLRRMVGSGVEPNGYSLSGGLLACAGVGRSALAHGK 144
Query: 178 QIHAFVL-TSGALPVDTVVQNSLLHMYLRCHCIEHARNLF 294
+IHA V+ S PVD VV+N +L MY RC IE+A +F
Sbjct: 145 EIHASVVKMSSRGPVDPVVENGVLDMYSRCGSIEYALRVF 184
Score = 63.5 bits (153), Expect = 2e-08
Identities = 35/97 (36%), Positives = 54/97 (55%)
Frame = +1
Query: 4 RDVVSWTSMIVGYTQHHRYKHSLDALRSMIAASVVPNGYSFSGALTACSRLQALSQGQQI 183
R++V+ SM+ + + +L SM + V +G+SFS + AC L L QG Q+
Sbjct: 190 RNMVACNSMMAALLGTGQAEDALRLFVSMASCGVGVDGFSFSIVVDACGELALLKQGMQV 249
Query: 184 HAFVLTSGALPVDTVVQNSLLHMYLRCHCIEHARNLF 294
HA V+ G D VV+NSL+ MY +C C++ A +F
Sbjct: 250 HAQVV-GGGFEADVVVRNSLVDMYAKCGCVDSAELVF 285
>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like, partial [Cucumis sativus]
Length = 1090
Score = 86.3 bits (212), Expect = 2e-15
Identities = 42/102 (41%), Positives = 66/102 (64%)
Frame = +1
Query: 7 DVVSWTSMIVGYTQHHRYKHSLDALRSMIAASVVPNGYSFSGALTACSRLQALSQGQQIH 186
DV +WTSMI G++Q R +LD + MI A V PN + + A +AC+ L++L G +IH
Sbjct: 315 DVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIH 374
Query: 187 AFVLTSGALPVDTVVQNSLLHMYLRCHCIEHARNLFDSAMDK 312
F + G + +T+V NSL+ MY +C +E AR++FD+ ++K
Sbjct: 375 CFAIKMG-IARETLVGNSLIDMYSKCGKLEAARHVFDTILEK 415
>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Cucumis sativus]
Length = 1463
Score = 86.3 bits (212), Expect = 2e-15
Identities = 42/102 (41%), Positives = 66/102 (64%)
Frame = +1
Query: 7 DVVSWTSMIVGYTQHHRYKHSLDALRSMIAASVVPNGYSFSGALTACSRLQALSQGQQIH 186
DV +WTSMI G++Q R +LD + MI A V PN + + A +AC+ L++L G +IH
Sbjct: 315 DVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIH 374
Query: 187 AFVLTSGALPVDTVVQNSLLHMYLRCHCIEHARNLFDSAMDK 312
F + G + +T+V NSL+ MY +C +E AR++FD+ ++K
Sbjct: 375 CFAIKMG-IARETLVGNSLIDMYSKCGKLEAARHVFDTILEK 415
>ref|XP_002299387.1| predicted protein [Populus trichocarpa] gi|222846645|gb|EEE84192.1|
predicted protein [Populus trichocarpa]
Length = 814
Score = 85.5 bits (210), Expect = 4e-15
Identities = 40/105 (38%), Positives = 66/105 (62%)
Frame = +1
Query: 1 DRDVVSWTSMIVGYTQHHRYKHSLDALRSMIAASVVPNGYSFSGALTACSRLQALSQGQQ 180
DRD+V+W SMI ++Q+ R+ +L LR M+ V P+G +F+ L ACS L L G++
Sbjct: 178 DRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKE 237
Query: 181 IHAFVLTSGALPVDTVVQNSLLHMYLRCHCIEHARNLFDSAMDKR 315
IHA+ L + + ++ V ++L+ MY C +E R +FDS +D++
Sbjct: 238 IHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRK 282
Score = 55.5 bits (132), Expect = 5e-06
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Frame = +1
Query: 1 DRDVVSWTSMIVGYTQHHRYKHSLDALRSMIAAS----------------VVPNGYSFSG 132
DRD+VSW ++I Y R +L L M PN +
Sbjct: 382 DRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMT 441
Query: 133 ALTACSRLQALSQGQQIHAFVLTSGALPVDTVVQNSLLHMYLRCHCIEHARNLFD 297
L C+ L AL++G++IHA+ + + L V ++L+ MY +C C+ AR +FD
Sbjct: 442 VLPGCASLSALAKGKEIHAYAIRN-LLASQVTVGSALVDMYAKCGCLNLARRVFD 495
Score = 55.1 bits (131), Expect = 6e-06
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Frame = +1
Query: 1 DRDVVSWTSMIVGYTQ-HHRYKHSLDALRSMIAASVVPNGYSFSGALTACSRLQALSQGQ 177
DR + W +MI GY Q H K + + AA + N + S + A R + +S+ +
Sbjct: 280 DRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKE 339
Query: 178 QIHAFVLTSGALPVDTVVQNSLLHMYLRCHCIEHARNLFDSAMDK 312
IH +V+ G L + +QN+L+ MY R I+ ++ +FDS D+
Sbjct: 340 GIHGYVIKRG-LETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDR 383