BLASTX nr result

ID: Coptis25_contig00032596 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032596
         (508 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277247.1| PREDICTED: RPM1-interacting protein 4 [Vitis...   126   2e-27
ref|XP_003550860.1| PREDICTED: RPM1-interacting protein 4-like [...   111   5e-23
ref|XP_002322218.1| predicted protein [Populus trichocarpa] gi|2...   107   1e-21
ref|XP_003525623.1| PREDICTED: uncharacterized protein LOC100526...   103   1e-20
gb|ACU15988.1| unknown [Glycine max]                                  102   3e-20

>ref|XP_002277247.1| PREDICTED: RPM1-interacting protein 4 [Vitis vinifera]
           gi|297733635|emb|CBI14882.3| unnamed protein product
           [Vitis vinifera]
          Length = 74

 Score =  126 bits (317), Expect = 2e-27
 Identities = 55/71 (77%), Positives = 61/71 (85%)
 Frame = +1

Query: 91  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDDKKTNTSTNVVTPRRTNDNYKQNEEVR 270
           QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARD+KKTN + NV +PRR  + YKQNE+  
Sbjct: 4   QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNAAGNVASPRRNGNGYKQNEDYH 63

Query: 271 HPTKRKWFCCG 303
           +  KRKWFCCG
Sbjct: 64  YSPKRKWFCCG 74


>ref|XP_003550860.1| PREDICTED: RPM1-interacting protein 4-like [Glycine max]
          Length = 75

 Score =  111 bits (278), Expect = 5e-23
 Identities = 53/75 (70%), Positives = 61/75 (81%), Gaps = 3/75 (4%)
 Frame = +1

Query: 88  KQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDDKKTNTSTNVVTPRRTNDNYKQNEEV 267
           +Q+ GRPLPKFGEWDVNNPASAEGFTVIFNKARD+KKTNT+T   TPRR++  +K NE  
Sbjct: 2   QQENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTATATPTPRRSDPVFK-NENY 60

Query: 268 RHPT---KRKWFCCG 303
            +P    KRKWFCCG
Sbjct: 61  NNPQYSGKRKWFCCG 75


>ref|XP_002322218.1| predicted protein [Populus trichocarpa] gi|222869214|gb|EEF06345.1|
           predicted protein [Populus trichocarpa]
          Length = 76

 Score =  107 bits (267), Expect = 1e-21
 Identities = 50/72 (69%), Positives = 57/72 (79%), Gaps = 4/72 (5%)
 Frame = +1

Query: 97  RGRPLPKFGEWDVNNPASAEGFTVIFNKARDDKKT-NTSTNVVTPRRTNDNYK---QNEE 264
           +GRPLPKFGEWDVNNPASAEGFTVIFNKARD+KKT N+   VV+PRRT   Y    +NE 
Sbjct: 4   QGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTKNSPEKVVSPRRTEPGYNKNDKNEN 63

Query: 265 VRHPTKRKWFCC 300
            +HP KR+W CC
Sbjct: 64  YKHPPKRRWLCC 75


>ref|XP_003525623.1| PREDICTED: uncharacterized protein LOC100526954 [Glycine max]
          Length = 72

 Score =  103 bits (258), Expect = 1e-20
 Identities = 52/74 (70%), Positives = 58/74 (78%), Gaps = 3/74 (4%)
 Frame = +1

Query: 91  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDDKKTNTSTNVVTPRRTNDNYKQNEEVR 270
           Q+ GRPLPKFGEWDVNNPASAEGFTVIFNKARD+KKTNT+    TPRR++  +K NE   
Sbjct: 4   QENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTA----TPRRSDPVFK-NENYN 58

Query: 271 HPT---KRKWFCCG 303
            P    KRKWFCCG
Sbjct: 59  TPQYSGKRKWFCCG 72


>gb|ACU15988.1| unknown [Glycine max]
          Length = 72

 Score =  102 bits (254), Expect = 3e-20
 Identities = 51/74 (68%), Positives = 58/74 (78%), Gaps = 3/74 (4%)
 Frame = +1

Query: 91  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDDKKTNTSTNVVTPRRTNDNYKQNEEVR 270
           Q+ GRPLPKFGEWDVNNPASAEGFTVIFNKARD++KTNT+    TPRR++  +K NE   
Sbjct: 4   QENGRPLPKFGEWDVNNPASAEGFTVIFNKARDEEKTNTA----TPRRSDPVFK-NENYN 58

Query: 271 HPT---KRKWFCCG 303
            P    KRKWFCCG
Sbjct: 59  TPQYSGKRKWFCCG 72


Top