BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032537
         (264 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519997.1| pentatricopeptide repeat-containing protein,...    65   4e-09
ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containi...    60   2e-07
ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containi...    59   3e-07
emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]    59   3e-07

>ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540761|gb|EEF42321.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1429

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
 Frame = +1

Query: 40  KFSYSRASPSIRWPHLKLTENPTSSNTK-DIIFTSPSLEQDPSVENETSPSSTD----DL 204
           KFSYSRASPSIRWPHLKL+++ TS +T+  I   SP+   D   E+E+   S      + 
Sbjct: 16  KFSYSRASPSIRWPHLKLSDSCTSPHTQFHIASPSPTQFFDEMPESESDNKSPKLGALES 75

Query: 205 LDKNDETLQALGRVSKTRVK 264
           ++ +DE+ + LGR+S+TRVK
Sbjct: 76  VEVDDESQERLGRLSRTRVK 95


>ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
 Frame = +1

Query: 40  KFSYSRASPSIRWPHLKLTENPTSSN---TKDIIFTSPSLEQDPSVENETSPSSTDDLLD 210
           KF Y+RASPSIRWPHLKL++   S+     ++ IF S +   +   E    P   D   D
Sbjct: 60  KFIYTRASPSIRWPHLKLSQTYPSTQPHFPQNDIFPSKTPPSESPEEESPKPVVND---D 116

Query: 211 KNDETLQALGRVSKTRVK 264
            +DE  +ALGR SKTRVK
Sbjct: 117 DDDEAQEALGRRSKTRVK 134


>ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 35/81 (43%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
 Frame = +1

Query: 40  KFSYSRASPSIRWPHLKLTENPTSSNTKDIIFTSPSLEQDPSVE------NETSPSSTDD 201
           KFSYSRASPS+RWPHLKLTEN   S     +     L +D           E   +   +
Sbjct: 27  KFSYSRASPSVRWPHLKLTENYPPSQRPTHVVEDVGLLEDTHDSLGKEEIREIGEAGFGE 86

Query: 202 LLDKNDETLQALGRVSKTRVK 264
            L+  DET   LG+ SK RVK
Sbjct: 87  GLELGDETQDFLGKTSKNRVK 107


>emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 35/81 (43%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
 Frame = +1

Query: 40  KFSYSRASPSIRWPHLKLTENPTSSNTKDIIFTSPSLEQDPSVE------NETSPSSTDD 201
           KFSYSRASPS+RWPHLKLTEN   S     +     L +D           E   +   +
Sbjct: 59  KFSYSRASPSVRWPHLKLTENYPPSQRPTHVVEDVGLLEDTHDSLGKEEIREIGEAGFGE 118

Query: 202 LLDKNDETLQALGRVSKTRVK 264
            L+  DET   LG+ SK RVK
Sbjct: 119 GLELGDETQDFLGKTSKNRVK 139