BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032473
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containi...   104   8e-21
ref|XP_002529628.1| pentatricopeptide repeat-containing protein,...   103   2e-20
ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago ...    96   3e-18
ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15

>ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  104 bits (259), Expect = 8e-21
 Identities = 47/72 (65%), Positives = 60/72 (83%)
 Frame = -2

Query: 218 ISLDQQVITILKKCRHLNHLKQLQSFLITLGHSQTQFLVFKLVRFCILSLSNLDYARSIF 39
           ++L+  V+ +L++C HLNHLKQLQ+FLITLGH+QT F  FKL+RFC L+LSNL YAR IF
Sbjct: 52  LNLNNSVLALLERCIHLNHLKQLQAFLITLGHAQTHFYAFKLLRFCTLALSNLSYARFIF 111

Query: 38  HNLNSPNVYLYT 3
            ++ SPNVYLYT
Sbjct: 112 DHVESPNVYLYT 123


>ref|XP_002529628.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530913|gb|EEF32773.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 400

 Score =  103 bits (256), Expect = 2e-20
 Identities = 47/71 (66%), Positives = 60/71 (84%)
 Frame = -2

Query: 215 SLDQQVITILKKCRHLNHLKQLQSFLITLGHSQTQFLVFKLVRFCILSLSNLDYARSIFH 36
           +L+Q  + IL KC +LNHLKQLQS+L  +GHSQTQF  FKLVRFCIL+LSN +YAR IF+
Sbjct: 7   NLNQLALAILSKCNNLNHLKQLQSYLTVIGHSQTQFYSFKLVRFCILNLSNFNYARYIFN 66

Query: 35  NLNSPNVYLYT 3
           +L+SPN+YL+T
Sbjct: 67  HLHSPNIYLFT 77


>ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
           gi|449510706|ref|XP_004163739.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
          Length = 563

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 47/70 (67%), Positives = 56/70 (80%)
 Frame = -2

Query: 212 LDQQVITILKKCRHLNHLKQLQSFLITLGHSQTQFLVFKLVRFCILSLSNLDYARSIFHN 33
           L+Q  +  L+KC +LNHLKQLQ FLI+ GHSQTQF  FKLVRFC L+L++L YAR IF N
Sbjct: 42  LNQLFVAALEKCSNLNHLKQLQGFLISHGHSQTQFFAFKLVRFCNLTLADLCYARYIFDN 101

Query: 32  LNSPNVYLYT 3
           L SPNV+LYT
Sbjct: 102 LTSPNVFLYT 111


>ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
           gi|355494601|gb|AES75804.1| hypothetical protein
           MTR_6g059820 [Medicago truncatula]
          Length = 528

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 45/71 (63%), Positives = 56/71 (78%)
 Frame = -2

Query: 215 SLDQQVITILKKCRHLNHLKQLQSFLITLGHSQTQFLVFKLVRFCILSLSNLDYARSIFH 36
           +L++ V TIL K  HLN LKQLQS L TLGHSQT F  FKL+RFC L+LSNL YA  IF+
Sbjct: 4   NLNELVTTILTKINHLNQLKQLQSHLTTLGHSQTHFYAFKLIRFCSLNLSNLHYAHQIFN 63

Query: 35  NLNSPNVYLYT 3
           +++SPN+YL+T
Sbjct: 64  HIHSPNIYLFT 74


>ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Glycine max]
          Length = 522

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 40/71 (56%), Positives = 53/71 (74%)
 Frame = -2

Query: 215 SLDQQVITILKKCRHLNHLKQLQSFLITLGHSQTQFLVFKLVRFCILSLSNLDYARSIFH 36
           +L++ V+  L K  HLNHLKQLQ++L TLGH+ T F  FKL+RFC L+LSNL YAR IF 
Sbjct: 4   NLNEHVLDTLSKSNHLNHLKQLQAYLTTLGHAHTHFYAFKLIRFCTLTLSNLTYARLIFD 63

Query: 35  NLNSPNVYLYT 3
           ++ S N +L+T
Sbjct: 64  HIPSLNTHLFT 74