BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032435
         (389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABI34306.1| Polyprotein, putative [Solanum demissum]               129   2e-33
gb|AAU90333.1| Putative gag and pol polyprotein, identical [Sola...   125   4e-27
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]                92   3e-19
gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr...    86   9e-19
emb|CAN82978.1| hypothetical protein VITISV_023328 [Vitis vinifera]    87   4e-18

>gb|ABI34306.1| Polyprotein, putative [Solanum demissum]
          Length = 1691

 Score =  129 bits (325), Expect(2) = 2e-33
 Identities = 64/113 (56%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
 Frame = -2

Query: 388 EPFVVMIIEVNSVNVCEGW*AYTGASRRVCYNWN*FKSYTTTTNQE-VLLGDNHTTKVLG 212
           EPFV +I ++N V   +GW A +GA+R VCY+ + FK YT     + ++LGD+HTT+VLG
Sbjct: 292 EPFVAVITDINMVENVDGWWADSGANRHVCYDKDWFKKYTHFEEPKTIMLGDSHTTQVLG 351

Query: 211 TGDVELQFTSGKKLLLKDMLHTPEIRNNLVSGFILNKAGFQQVIGSDQYVITK 53
           TGDVEL FTSG+ L LKD+L+TP +R  L+S F+LNKAGF+Q+I S+QYVI K
Sbjct: 352 TGDVELCFTSGRVLTLKDVLYTPSMRKKLMSSFLLNKAGFKQIIESNQYVIVK 404



 Score = 37.7 bits (86), Expect(2) = 2e-33
 Identities = 14/17 (82%), Positives = 17/17 (100%)
 Frame = -1

Query: 53  VFIGKGYACNGMFKLNV 3
           +F+GKGYAC+GMFKLNV
Sbjct: 407 IFVGKGYACDGMFKLNV 423


>gb|AAU90333.1| Putative gag and pol polyprotein, identical [Solanum demissum]
          Length = 853

 Score =  125 bits (314), Expect = 4e-27
 Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
 Frame = -2

Query: 388 EPFVVMIIEVNSVNVCEGW*AYTGASRRVCYNWN*FKSYTTTTNQE-VLLGDNHTTKVLG 212
           EPFV +I ++N V   +GW   +GA+R VCY+ + FK YT     + ++LGD HTT+VLG
Sbjct: 139 EPFVAVITDINMVENVDGWWVDSGANRHVCYDKDWFKKYTHFEEPKTIMLGDAHTTQVLG 198

Query: 211 TGDVELQFTSGKKLLLKDMLHTPEIRNNLVSGFILNKAGFQQVIGSDQYVITK 53
            GDVEL F+SG++L LKD+L+TP +R NL+S F+ NK GF+Q+I SDQYVI K
Sbjct: 199 KGDVELCFSSGRELTLKDVLYTPSMRKNLMSSFLFNKVGFKQIIESDQYVIVK 251


>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1290

 Score = 92.4 bits (228), Expect(2) = 3e-19
 Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
 Frame = -2

Query: 388 EPFVVMIIEVNSVNVCEGW*AYTGASRRVCYNWN*FKSYTTTTN--QEVLLGDNHTTKVL 215
           +  V ++ +VN V     W   +GA+R +C N N F SYT+  +  ++V LGD+ TT VL
Sbjct: 304 DTIVAVVSQVNLVTNVSKWVVDSGATRHICANRNVFTSYTSVGDGEEQVYLGDSRTTPVL 363

Query: 214 GTGDVELQFTSGKKLLLKDMLHTPEIRNNLVSGFILNKAGFQQVIGSDQYVITKS 50
           G G V L+ TSGK L L D+LH P IR NLVS  +L+K G +    SD+ VITK+
Sbjct: 364 GKGKVLLKLTSGKTLALNDVLHVPSIRVNLVSVALLSKVGVKVSFESDKIVITKN 418



 Score = 27.3 bits (59), Expect(2) = 3e-19
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 53  VFIGKGYACNGMFKLNV 3
           VF+GKGY   G+F LN+
Sbjct: 420 VFVGKGYCDQGLFVLNI 436


>gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
          Length = 1034

 Score = 86.3 bits (212), Expect(2) = 9e-19
 Identities = 51/112 (45%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
 Frame = -2

Query: 382 FVVMIIEVNSVNVCE-GW*AYTGASRRVCYNWN*FKSYTTTTNQEVL-LGDNHTTKVLGT 209
           +V  I EV  V   E  W   +GA+  VC +   FK+Y    +  VL +G+  T  +LG 
Sbjct: 250 YVSKIAEVFYVQDDEVAWWIDSGATIHVCKDRGWFKTYEPVQDGSVLYMGNESTAPILGR 309

Query: 208 GDVELQFTSGKKLLLKDMLHTPEIRNNLVSGFILNKAGFQQVIGSDQYVITK 53
           G V L+F+SGK L L D++H P IR NLVSG +LNK GF+QV  SD+YV++K
Sbjct: 310 GKVVLEFSSGKTLDLNDVIHVPGIRKNLVSGSVLNKCGFKQVYESDKYVLSK 361



 Score = 32.0 bits (71), Expect(2) = 9e-19
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -1

Query: 53  VFIGKGYACNGMFKLNV 3
           VF+G GY CNGMF LN+
Sbjct: 364 VFVGFGYFCNGMFMLNI 380


>emb|CAN82978.1| hypothetical protein VITISV_023328 [Vitis vinifera]
          Length = 474

 Score = 86.7 bits (213), Expect(2) = 4e-18
 Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
 Frame = -2

Query: 373 MIIEVNSVNVCEGW*AYTGASRRVCYNWN*FKSYTTTT-NQEVLLGDNHTTKVLGTGDVE 197
           ++ E N V   + W   TGA+R +C N   F +Y     N+E+ +G + ++KV G G V 
Sbjct: 224 VVSECNIVGNTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGYSSSSKVEGRGKVI 283

Query: 196 LQFTSGKKLLLKDMLHTPEIRNNLVSGFILNKAGFQQVIGSDQYVITKS 50
           L+ TSGK+L L D+LH P+IR NLVS  +L+K GF+ V  SD++V+TK+
Sbjct: 284 LKMTSGKELTLNDVLHVPDIRKNLVSRSLLSKNGFKLVFVSDKFVLTKN 332



 Score = 29.3 bits (64), Expect(2) = 4e-18
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -1

Query: 53  VFIGKGYACNGMFKLNV 3
           +F+GKGY  +G+FK+NV
Sbjct: 334 MFVGKGYLSDGLFKMNV 350