BLASTX nr result
ID: Coptis25_contig00032435
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00032435 (389 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABI34306.1| Polyprotein, putative [Solanum demissum] 129 2e-33 gb|AAU90333.1| Putative gag and pol polyprotein, identical [Sola... 125 4e-27 gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] 92 3e-19 gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr... 86 9e-19 emb|CAN82978.1| hypothetical protein VITISV_023328 [Vitis vinifera] 87 4e-18 >gb|ABI34306.1| Polyprotein, putative [Solanum demissum] Length = 1691 Score = 129 bits (325), Expect(2) = 2e-33 Identities = 64/113 (56%), Positives = 86/113 (76%), Gaps = 1/113 (0%) Frame = -2 Query: 388 EPFVVMIIEVNSVNVCEGW*AYTGASRRVCYNWN*FKSYTTTTNQE-VLLGDNHTTKVLG 212 EPFV +I ++N V +GW A +GA+R VCY+ + FK YT + ++LGD+HTT+VLG Sbjct: 292 EPFVAVITDINMVENVDGWWADSGANRHVCYDKDWFKKYTHFEEPKTIMLGDSHTTQVLG 351 Query: 211 TGDVELQFTSGKKLLLKDMLHTPEIRNNLVSGFILNKAGFQQVIGSDQYVITK 53 TGDVEL FTSG+ L LKD+L+TP +R L+S F+LNKAGF+Q+I S+QYVI K Sbjct: 352 TGDVELCFTSGRVLTLKDVLYTPSMRKKLMSSFLLNKAGFKQIIESNQYVIVK 404 Score = 37.7 bits (86), Expect(2) = 2e-33 Identities = 14/17 (82%), Positives = 17/17 (100%) Frame = -1 Query: 53 VFIGKGYACNGMFKLNV 3 +F+GKGYAC+GMFKLNV Sbjct: 407 IFVGKGYACDGMFKLNV 423 >gb|AAU90333.1| Putative gag and pol polyprotein, identical [Solanum demissum] Length = 853 Score = 125 bits (314), Expect = 4e-27 Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%) Frame = -2 Query: 388 EPFVVMIIEVNSVNVCEGW*AYTGASRRVCYNWN*FKSYTTTTNQE-VLLGDNHTTKVLG 212 EPFV +I ++N V +GW +GA+R VCY+ + FK YT + ++LGD HTT+VLG Sbjct: 139 EPFVAVITDINMVENVDGWWVDSGANRHVCYDKDWFKKYTHFEEPKTIMLGDAHTTQVLG 198 Query: 211 TGDVELQFTSGKKLLLKDMLHTPEIRNNLVSGFILNKAGFQQVIGSDQYVITK 53 GDVEL F+SG++L LKD+L+TP +R NL+S F+ NK GF+Q+I SDQYVI K Sbjct: 199 KGDVELCFSSGRELTLKDVLYTPSMRKNLMSSFLFNKVGFKQIIESDQYVIVK 251 >gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] Length = 1290 Score = 92.4 bits (228), Expect(2) = 3e-19 Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 2/115 (1%) Frame = -2 Query: 388 EPFVVMIIEVNSVNVCEGW*AYTGASRRVCYNWN*FKSYTTTTN--QEVLLGDNHTTKVL 215 + V ++ +VN V W +GA+R +C N N F SYT+ + ++V LGD+ TT VL Sbjct: 304 DTIVAVVSQVNLVTNVSKWVVDSGATRHICANRNVFTSYTSVGDGEEQVYLGDSRTTPVL 363 Query: 214 GTGDVELQFTSGKKLLLKDMLHTPEIRNNLVSGFILNKAGFQQVIGSDQYVITKS 50 G G V L+ TSGK L L D+LH P IR NLVS +L+K G + SD+ VITK+ Sbjct: 364 GKGKVLLKLTSGKTLALNDVLHVPSIRVNLVSVALLSKVGVKVSFESDKIVITKN 418 Score = 27.3 bits (59), Expect(2) = 3e-19 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -1 Query: 53 VFIGKGYACNGMFKLNV 3 VF+GKGY G+F LN+ Sbjct: 420 VFVGKGYCDQGLFVLNI 436 >gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata] Length = 1034 Score = 86.3 bits (212), Expect(2) = 9e-19 Identities = 51/112 (45%), Positives = 69/112 (61%), Gaps = 2/112 (1%) Frame = -2 Query: 382 FVVMIIEVNSVNVCE-GW*AYTGASRRVCYNWN*FKSYTTTTNQEVL-LGDNHTTKVLGT 209 +V I EV V E W +GA+ VC + FK+Y + VL +G+ T +LG Sbjct: 250 YVSKIAEVFYVQDDEVAWWIDSGATIHVCKDRGWFKTYEPVQDGSVLYMGNESTAPILGR 309 Query: 208 GDVELQFTSGKKLLLKDMLHTPEIRNNLVSGFILNKAGFQQVIGSDQYVITK 53 G V L+F+SGK L L D++H P IR NLVSG +LNK GF+QV SD+YV++K Sbjct: 310 GKVVLEFSSGKTLDLNDVIHVPGIRKNLVSGSVLNKCGFKQVYESDKYVLSK 361 Score = 32.0 bits (71), Expect(2) = 9e-19 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -1 Query: 53 VFIGKGYACNGMFKLNV 3 VF+G GY CNGMF LN+ Sbjct: 364 VFVGFGYFCNGMFMLNI 380 >emb|CAN82978.1| hypothetical protein VITISV_023328 [Vitis vinifera] Length = 474 Score = 86.7 bits (213), Expect(2) = 4e-18 Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 1/109 (0%) Frame = -2 Query: 373 MIIEVNSVNVCEGW*AYTGASRRVCYNWN*FKSYTTTT-NQEVLLGDNHTTKVLGTGDVE 197 ++ E N V + W TGA+R +C N F +Y N+E+ +G + ++KV G G V Sbjct: 224 VVSECNIVGNTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGYSSSSKVEGRGKVI 283 Query: 196 LQFTSGKKLLLKDMLHTPEIRNNLVSGFILNKAGFQQVIGSDQYVITKS 50 L+ TSGK+L L D+LH P+IR NLVS +L+K GF+ V SD++V+TK+ Sbjct: 284 LKMTSGKELTLNDVLHVPDIRKNLVSRSLLSKNGFKLVFVSDKFVLTKN 332 Score = 29.3 bits (64), Expect(2) = 4e-18 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -1 Query: 53 VFIGKGYACNGMFKLNV 3 +F+GKGY +G+FK+NV Sbjct: 334 MFVGKGYLSDGLFKMNV 350