BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032411
         (204 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat...    74   2e-11
ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat...    72   5e-11
ref|XP_003629614.1| Pentatricopeptide repeat-containing protein ...    72   5e-11
ref|XP_002313097.1| predicted protein [Populus trichocarpa] gi|2...    70   2e-10
gb|ABR17050.1| unknown [Picea sitchensis] gi|224284228|gb|ACN398...    70   2e-10

>ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 31/66 (46%), Positives = 46/66 (69%)
 Frame = +2

Query: 5   TYTTMIYGFCKRRMISEAQDLFVEMEEKGIAPDEFTYNIMIQGLIVENDIPKAVRFLTEM 184
           TYT MI G CK+  + +A+DL + MEE G  PD  TYN+ +QGL+ + +I +++++LT M
Sbjct: 499 TYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIM 558

Query: 185 VKKGFS 202
             KGFS
Sbjct: 559 RDKGFS 564


>ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 30/67 (44%), Positives = 47/67 (70%)
 Frame = +2

Query: 2   ITYTTMIYGFCKRRMISEAQDLFVEMEEKGIAPDEFTYNIMIQGLIVENDIPKAVRFLTE 181
           + YTTMI G CK  ++ +A+DL ++MEE G  P+EFTYN++++GL+   DI ++ ++L  
Sbjct: 429 VAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGLLQRYDISRSTKYLML 488

Query: 182 MVKKGFS 202
           M  KG S
Sbjct: 489 MKGKGLS 495


>ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355523636|gb|AET04090.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 592

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 31/65 (47%), Positives = 45/65 (69%)
 Frame = +2

Query: 8   YTTMIYGFCKRRMISEAQDLFVEMEEKGIAPDEFTYNIMIQGLIVENDIPKAVRFLTEMV 187
           YT MI GF K+ ++ +A+DL   MEE G  PD  TYN+ +QGL+ E +I +++++LT M 
Sbjct: 499 YTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMR 558

Query: 188 KKGFS 202
            KGFS
Sbjct: 559 DKGFS 563


>ref|XP_002313097.1| predicted protein [Populus trichocarpa] gi|222849505|gb|EEE87052.1|
           predicted protein [Populus trichocarpa]
          Length = 751

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 32/66 (48%), Positives = 45/66 (68%)
 Frame = +2

Query: 2   ITYTTMIYGFCKRRMISEAQDLFVEMEEKGIAPDEFTYNIMIQGLIVENDIPKAVRFLTE 181
           ITY+++I G C++R ++EA DLF EM  K + PDEFTY  +I G   E D+ +A+    E
Sbjct: 484 ITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDE 543

Query: 182 MVKKGF 199
           M+KKGF
Sbjct: 544 MIKKGF 549


>gb|ABR17050.1| unknown [Picea sitchensis] gi|224284228|gb|ACN39850.1| unknown
           [Picea sitchensis]
          Length = 420

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 33/67 (49%), Positives = 44/67 (65%)
 Frame = +2

Query: 2   ITYTTMIYGFCKRRMISEAQDLFVEMEEKGIAPDEFTYNIMIQGLIVENDIPKAVRFLTE 181
           I+Y+  I G CK+  I+EA ++F EMEEKG APD FTYNI+I GL  +  +   V  + E
Sbjct: 92  ISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDE 151

Query: 182 MVKKGFS 202
           M  +GFS
Sbjct: 152 MQARGFS 158



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 27/65 (41%), Positives = 40/65 (61%)
 Frame = +2

Query: 2   ITYTTMIYGFCKRRMISEAQDLFVEMEEKGIAPDEFTYNIMIQGLIVENDIPKAVRFLTE 181
           +TYTT+I+GFC    +  A D+  EME +GI P+  TY  +IQGL    ++ +A+  L E
Sbjct: 162 VTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKE 221

Query: 182 MVKKG 196
           M  +G
Sbjct: 222 MKLRG 226