BLASTX nr result
ID: Coptis25_contig00032330
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00032330
(590 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281382.2| PREDICTED: zinc finger Ran-binding domain-co... 141 1e-47
emb|CBI15155.3| unnamed protein product [Vitis vinifera] 141 1e-47
ref|XP_002873325.1| SNF2 domain-containing protein [Arabidopsis ... 137 6e-41
ref|NP_001060181.2| Os07g0598300 [Oryza sativa Japonica Group] g... 125 8e-40
dbj|BAC83216.1| putative DNA helicase [Oryza sativa Japonica Group] 125 8e-40
>ref|XP_002281382.2| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Vitis vinifera]
Length = 1280
Score = 141 bits (356), Expect(2) = 1e-47
Identities = 72/121 (59%), Positives = 91/121 (75%)
Frame = +1
Query: 1 DMLWPGLLGTSKYEFAKTYCEAKMVQGAQGKVFQDFSKGVRLEELNVLLTQTVMIRRLKE 180
+MLWPGLLG KYEFAK YC V+G+QGKVFQDFSKG+RLEELNVLL QTVMIRRLKE
Sbjct: 373 NMLWPGLLGRDKYEFAKIYCAVNFVRGSQGKVFQDFSKGIRLEELNVLLKQTVMIRRLKE 432
Query: 181 HLLVQLPPKRRQIVSLVLERSDINMAVSAMKEGDTSSIEN*QETEPMANDCSSEDDDDVS 360
H+L +LPPKRRQI+ L+L+R+DI+ A++A + + EN +A + S++ D S
Sbjct: 433 HVLGELPPKRRQIIRLLLKRADIDFAIAATRVTKCDASEN-----NVAEEKPSDNKPDDS 487
Query: 361 G 363
G
Sbjct: 488 G 488
Score = 73.9 bits (180), Expect(2) = 1e-47
Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
Frame = +3
Query: 372 SVSESDDECGCPKSSRELSNQELGIAKFSGFQKWLAIHPIVTQP*SEGYSDVDLISH--K 545
S ++ DD G SS++LSNQ+LGIAK SGF +WL+ HPIV S+G + +D+ K
Sbjct: 480 SDNKPDDSGGAHSSSKKLSNQQLGIAKLSGFLEWLSFHPIVAD--SDGVASLDMKPRCLK 537
Query: 546 MIVFPHHIKVLDKVQ 590
MI+F HH+KVLD +Q
Sbjct: 538 MIIFAHHLKVLDGIQ 552
>emb|CBI15155.3| unnamed protein product [Vitis vinifera]
Length = 1201
Score = 141 bits (356), Expect(2) = 1e-47
Identities = 72/121 (59%), Positives = 91/121 (75%)
Frame = +1
Query: 1 DMLWPGLLGTSKYEFAKTYCEAKMVQGAQGKVFQDFSKGVRLEELNVLLTQTVMIRRLKE 180
+MLWPGLLG KYEFAK YC V+G+QGKVFQDFSKG+RLEELNVLL QTVMIRRLKE
Sbjct: 375 NMLWPGLLGRDKYEFAKIYCAVNFVRGSQGKVFQDFSKGIRLEELNVLLKQTVMIRRLKE 434
Query: 181 HLLVQLPPKRRQIVSLVLERSDINMAVSAMKEGDTSSIEN*QETEPMANDCSSEDDDDVS 360
H+L +LPPKRRQI+ L+L+R+DI+ A++A + + EN +A + S++ D S
Sbjct: 435 HVLGELPPKRRQIIRLLLKRADIDFAIAATRVTKCDASEN-----NVAEEKPSDNKPDDS 489
Query: 361 G 363
G
Sbjct: 490 G 490
Score = 73.9 bits (180), Expect(2) = 1e-47
Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
Frame = +3
Query: 372 SVSESDDECGCPKSSRELSNQELGIAKFSGFQKWLAIHPIVTQP*SEGYSDVDLISH--K 545
S ++ DD G SS++LSNQ+LGIAK SGF +WL+ HPIV S+G + +D+ K
Sbjct: 482 SDNKPDDSGGAHSSSKKLSNQQLGIAKLSGFLEWLSFHPIVAD--SDGVASLDMKPRCLK 539
Query: 546 MIVFPHHIKVLDKVQ 590
MI+F HH+KVLD +Q
Sbjct: 540 MIIFAHHLKVLDGIQ 554
>ref|XP_002873325.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297319162|gb|EFH49584.1| SNF2 domain-containing
protein [Arabidopsis lyrata subsp. lyrata]
Length = 1194
Score = 137 bits (346), Expect(2) = 6e-41
Identities = 67/117 (57%), Positives = 87/117 (74%)
Frame = +1
Query: 1 DMLWPGLLGTSKYEFAKTYCEAKMVQGAQGKVFQDFSKGVRLEELNVLLTQTVMIRRLKE 180
++LWPGLLG KYEFAKTYCE +V+G QGK+FQDFSKG RL ELN+LL QTVMIRRLK+
Sbjct: 372 NILWPGLLGKEKYEFAKTYCEVGLVRGMQGKIFQDFSKGTRLLELNILLNQTVMIRRLKQ 431
Query: 181 HLLVQLPPKRRQIVSLVLERSDINMAVSAMKEGDTSSIEN*QETEPMANDCSSEDDD 351
H+L QLPPKRRQIV+++L++SDI +A + + E + + + T + S E D
Sbjct: 432 HVLTQLPPKRRQIVTILLKKSDIALATAIVSEANQKANKQNDGTIAEVTENSHEPKD 488
Score = 55.5 bits (132), Expect(2) = 6e-41
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 10/72 (13%)
Frame = +3
Query: 405 PKSSRE------LSNQELGIAKFSGFQKWLAIHPIVTQP*SEGYS----DVDLISHKMIV 554
P S RE LS Q+LGIAK S F++WL++HP+++ Y+ D D S KM+V
Sbjct: 508 PNSDRENQLCGKLSYQQLGIAKLSAFREWLSLHPLLS---GLDYTPEDIDGDTSSTKMVV 564
Query: 555 FPHHIKVLDKVQ 590
F HH KVLD +Q
Sbjct: 565 FAHHHKVLDGIQ 576
>ref|NP_001060181.2| Os07g0598300 [Oryza sativa Japonica Group]
gi|255677946|dbj|BAF22095.2| Os07g0598300, partial
[Oryza sativa Japonica Group]
Length = 1158
Score = 125 bits (314), Expect(2) = 8e-40
Identities = 65/120 (54%), Positives = 85/120 (70%)
Frame = +1
Query: 1 DMLWPGLLGTSKYEFAKTYCEAKMVQGAQGKVFQDFSKGVRLEELNVLLTQTVMIRRLKE 180
+MLWP LLG++K++FA YC VQG G+ +QDFSKG RL ELNVLL+QT+MIRRLKE
Sbjct: 358 NMLWPHLLGSNKFDFANKYCLLHTVQGCNGRTYQDFSKGARLTELNVLLSQTLMIRRLKE 417
Query: 181 HLLVQLPPKRRQIVSLVLERSDINMAVSAMKEGDTSSIEN*QETEPMANDCSSEDDDDVS 360
HLL +LPPKRRQI+ L L SDI A+S +K +TS E +A+ +S D ++V+
Sbjct: 418 HLLNELPPKRRQIIWLKLNASDIKTAISCIKGVNTS-----DEIPTIASPDNSNDSEEVN 472
Score = 63.9 bits (154), Expect(2) = 8e-40
Identities = 33/76 (43%), Positives = 43/76 (56%)
Frame = +3
Query: 363 DSRSVSESDDECGCPKSSRELSNQELGIAKFSGFQKWLAIHPIVTQP*SEGYSDVDLISH 542
DS V+ + + GC KS R L+ QE+GI K GF +W H I+ +P G D
Sbjct: 467 DSEEVNMEEAD-GCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQ 525
Query: 543 KMIVFPHHIKVLDKVQ 590
K I+F HH+KVLD VQ
Sbjct: 526 KTIIFAHHLKVLDGVQ 541
>dbj|BAC83216.1| putative DNA helicase [Oryza sativa Japonica Group]
Length = 1029
Score = 125 bits (314), Expect(2) = 8e-40
Identities = 65/120 (54%), Positives = 85/120 (70%)
Frame = +1
Query: 1 DMLWPGLLGTSKYEFAKTYCEAKMVQGAQGKVFQDFSKGVRLEELNVLLTQTVMIRRLKE 180
+MLWP LLG++K++FA YC VQG G+ +QDFSKG RL ELNVLL+QT+MIRRLKE
Sbjct: 229 NMLWPHLLGSNKFDFANKYCLLHTVQGCNGRTYQDFSKGARLTELNVLLSQTLMIRRLKE 288
Query: 181 HLLVQLPPKRRQIVSLVLERSDINMAVSAMKEGDTSSIEN*QETEPMANDCSSEDDDDVS 360
HLL +LPPKRRQI+ L L SDI A+S +K +TS E +A+ +S D ++V+
Sbjct: 289 HLLNELPPKRRQIIWLKLNASDIKTAISCIKGVNTS-----DEIPTIASPDNSNDSEEVN 343
Score = 63.9 bits (154), Expect(2) = 8e-40
Identities = 33/76 (43%), Positives = 43/76 (56%)
Frame = +3
Query: 363 DSRSVSESDDECGCPKSSRELSNQELGIAKFSGFQKWLAIHPIVTQP*SEGYSDVDLISH 542
DS V+ + + GC KS R L+ QE+GI K GF +W H I+ +P G D
Sbjct: 338 DSEEVNMEEAD-GCKKSPRNLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQ 396
Query: 543 KMIVFPHHIKVLDKVQ 590
K I+F HH+KVLD VQ
Sbjct: 397 KTIIFAHHLKVLDGVQ 412