BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032323
         (1034 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    89   2e-15
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    86   2e-14
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    85   3e-14
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    71   4e-10
ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus c...    70   6e-10

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 89.0 bits (219), Expect = 2e-15
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 4/251 (1%)
 Frame = -1

Query: 1016 KLGFQLASTCYVICSLDIETQDHILFSCPHAVKC*SFVPNLFHL*SPLSNMNHMLTACNC 837
            K G  + S C   C    ET  HI   CP  ++   ++          S++ ++      
Sbjct: 104  KRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSSILNI------ 157

Query: 836  KSKLIKDL*KAATVTSIVALWKNINHVLYDGGTSKFSFLYLQVRKAVNRA---YKLVKSC 666
             S++++ +  +A V  + ++W   N+  +DG     S L+  +   V R      +VK  
Sbjct: 158  -SRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGA 216

Query: 665  MHNTTQDLATLSAFDLQIKLRRAPHSLECYWSSPPLGVIKANTDGSSRGNPGISGWGSTF 486
              ++ QD      F +  K  R     E  W  P  G +K N DGS  G+P     G  F
Sbjct: 217  --SSMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIF 274

Query: 485  RDSEGWVVGTLIGGLGVETNYVDESQAIVLSIEKALHMGWRRLWVESDSIAAMKAFQGNQ 306
            R S+    G     +G  T    E  A + +IEKA  +    +W+E+DS+  ++AF  N 
Sbjct: 275  RASQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNT 334

Query: 305  -VHWKSRAIWN 276
             V WK    W+
Sbjct: 335  GVPWKMHIRWH 345


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 85.5 bits (210), Expect = 2e-14
 Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
 Frame = -1

Query: 668  CMHNTTQDLATLSAFDLQIKLRRAPHSLECYWSSPPLGVIKANTDGSSRGNPGISGWGST 489
            C+H+   D A L  F +  + R+    +   W +P   ++K NTDGS  G  G++  G  
Sbjct: 987  CLHS---DSAILEEFSVSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVG--GLAACGGL 1041

Query: 488  FRDSEGWVVGTLIGGLGVETNYVDESQAIVLSIEKALHMGWRRLWVESDSIAAMKAFQGN 309
            FRDS G  +G     +G+ + +  E+ A +L++E A H GWR LW+ESDS +A+  F  +
Sbjct: 1042 FRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFSNS 1101

Query: 308  Q-VHWKSRAIWNWVKQNGLAHDH*HV--EGN 225
              V W  R  W+  ++ G+     H+  EGN
Sbjct: 1102 SLVQWLLRNRWHNAQRLGIQVISSHILHEGN 1132


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
            gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
            protein ccsA [Medicago truncatula]
          Length = 666

 Score = 84.7 bits (208), Expect = 3e-14
 Identities = 76/300 (25%), Positives = 127/300 (42%), Gaps = 6/300 (2%)
 Frame = -1

Query: 1016 KLGFQLASTCYVICSLDIETQDHILFSCPHAVKC*SFV-PNLFHL*SPLSNMNHMLTACN 840
            K G  + S C   C    E+  HI F C    +   ++      L    S +  ++    
Sbjct: 69   KRGCLIVSIC-CFCMKSAESSQHIFFECHVTSRLWDWLGKGTDKLLDCSSCLQLLIRNWG 127

Query: 839  CKSKLIKDL*KAATVTSIVALWKNINHVLYDGGTSKFSFLYLQVRKAVNRAYKLVKSCMH 660
              SKL+ ++  +A + +I ++W   N   +       + L+  +   V  ++ L     +
Sbjct: 128  SGSKLVNNILNSAIIHTIWSIWIERNQRCFHNKHQAMTTLFNIILAEVKMSFSLCMIKGN 187

Query: 659  NTTQDLATLSAFDLQIKLRRAPHSLECYWSSPPLGVIKANTDGSSRGNPGISGWGSTFRD 480
            +  QD      F++  K++R    L+  W  P   ++K N DGSS G       G   RD
Sbjct: 188  SAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRD 247

Query: 479  SEGWVVGTLIGGLGVETNYVDESQAIVLSIEKALHMGWRRLWVESDSIAAMKAF-QGNQV 303
            S    +G +   +G  T    E  A ++++EKA  M    + +E+DS+  + AF +G  V
Sbjct: 248  SNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGV 307

Query: 302  HWKSRAIWN--WVKQNGLAHDH*HV--EGNHFRSR*LCKELKGS*LPKGHTQWWTDKPNF 135
             W+ RA W   W   + ++    H+  EGN      L K  +G  L   +TQ WT  P F
Sbjct: 308  PWQMRARWQNCWDFCDSISCSCVHILREGNMVADA-LAKHGQG--LSLYYTQLWTSPPPF 364


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 71.2 bits (173), Expect = 4e-10
 Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 8/209 (3%)
 Frame = -1

Query: 698 VNRAYKLVKSCMHNTTQDLATLSAFDLQIKLRRAPHSLECYWSSPPLGVIKANTDGSSRG 519
           V  ++ L     ++  QD      F++  K++R    L+  W  P   ++K N DGSS G
Sbjct: 12  VKMSFSLCMIKGNSAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVG 71

Query: 518 NPGISGWGSTFRDSEGWVVGTLIGGLGVETNYVDESQAIVLSIEKALHMGWRRLWVESDS 339
                  G   RDS    +G +   +G  T    E  A ++++EKA  M    + +E+DS
Sbjct: 72  RHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDS 131

Query: 338 IAAMKAF-QGNQVHWKSRAIWN--WVKQNGLAHDH*HV--EGNHFRSR*LCKELKGS*LP 174
           +  + AF +G  V W+ RA W   W   + ++    H+  EGN      L K  +G  L 
Sbjct: 132 LKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHILREGNMVADA-LAKHGQG--LS 188

Query: 173 KGHTQWWTDKPNFFKRM---EHHGMTYYR 96
             +TQ WT  P F   +   +  G+ Y R
Sbjct: 189 LYYTQLWTSPPPFIYHLLLRDRLGLPYTR 217


>ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus communis]
           gi|223538579|gb|EEF40183.1| hypothetical protein
           RCOM_1732210 [Ricinus communis]
          Length = 95

 Score = 70.5 bits (171), Expect = 6e-10
 Identities = 33/79 (41%), Positives = 47/79 (59%)
 Frame = -1

Query: 575 WSSPPLGVIKANTDGSSRGNPGISGWGSTFRDSEGWVVGTLIGGLGVETNYVDESQAIVL 396
           W  PP   IK N++G++RG PG +G G  FR+  G V G  I  L     +V E +A + 
Sbjct: 9   WHPPPPSWIKLNSNGATRGAPGTTGVGGLFRNCRGVVKGCFIVPLSTTYAFVAEIKAAIY 68

Query: 395 SIEKALHMGWRRLWVESDS 339
            I+KA + GW ++W+ESDS
Sbjct: 69  GIDKAYNFGWNKIWLESDS 87