BLASTX nr result
ID: Coptis25_contig00032252
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00032252 (444 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002516590.1| pentatricopeptide repeat-containing protein,... 109 2e-22 ref|XP_002884209.1| pentatricopeptide repeat-containing protein ... 104 9e-21 ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containi... 102 4e-20 ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containi... 101 6e-20 ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis th... 100 1e-19 >ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 517 Score = 109 bits (273), Expect = 2e-22 Identities = 56/97 (57%), Positives = 66/97 (68%) Frame = +1 Query: 1 RTCRDLETAVIAMEQLPKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXXXXPG 180 RT ++E AVIAME L +LEPDD GNYVLLSNI+ADLG+W+ VS PG Sbjct: 407 RTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPG 466 Query: 181 CSLIEVNNEVHEFVVGDDSNPFLDEMYNILELLALQQ 291 CSLIEVNN EFV GDDS P+ E++ +LELLA Q Sbjct: 467 CSLIEVNNVAQEFVSGDDSKPYSKEIFWLLELLAFHQ 503 >ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 534 Score = 104 bits (259), Expect = 9e-21 Identities = 53/114 (46%), Positives = 71/114 (62%) Frame = +1 Query: 1 RTCRDLETAVIAMEQLPKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXXXXPG 180 RT +L+ A++AM+ L ++EPDD+GNYVLL+NI+ADLG+WE VS PG Sbjct: 421 RTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPG 480 Query: 181 CSLIEVNNEVHEFVVGDDSNPFLDEMYNILELLALQQGRNETTNKTLLKEISSV 342 CSLIEVNN V EFV GD+S PF E+ +L+L Q ++ N L I + Sbjct: 481 CSLIEVNNIVQEFVAGDNSKPFWTEISLVLQLFTSHQDQDVIKNNNALAFIGMI 534 >ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Glycine max] Length = 535 Score = 102 bits (253), Expect = 4e-20 Identities = 56/103 (54%), Positives = 68/103 (66%), Gaps = 3/103 (2%) Frame = +1 Query: 4 TCR---DLETAVIAMEQLPKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXXXX 174 +CR +LE AV+AMEQL KLEP++ GNYVLL+NI+A L +WE VS Sbjct: 416 SCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKT 475 Query: 175 PGCSLIEVNNEVHEFVVGDDSNPFLDEMYNILELLALQQGRNE 303 PGCSLIEVNN V EFV GDDS PF E++ IL+ L L Q R + Sbjct: 476 PGCSLIEVNNLVQEFVSGDDSKPFSQEVFWILKGLTLHQIRTK 518 >ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Vitis vinifera] Length = 541 Score = 101 bits (252), Expect = 6e-20 Identities = 52/99 (52%), Positives = 64/99 (64%) Frame = +1 Query: 1 RTCRDLETAVIAMEQLPKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXXXXPG 180 R+ +LE AVIAME L +LEP D GNYVLLSN++ADLG+W+ VS PG Sbjct: 429 RSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPG 488 Query: 181 CSLIEVNNEVHEFVVGDDSNPFLDEMYNILELLALQQGR 297 CS IEV+N V EF GDDS PF +Y +L+LL + Q R Sbjct: 489 CSSIEVDNMVQEFASGDDSKPFSKAIYRVLKLLVMHQRR 527 >ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana] gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana] gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana] Length = 534 Score = 100 bits (250), Expect = 1e-19 Identities = 54/114 (47%), Positives = 71/114 (62%) Frame = +1 Query: 1 RTCRDLETAVIAMEQLPKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXXXXPG 180 RT +L+ A++AM+ L +LEP+D+GNYVLL+NI+ADLG+WE VS PG Sbjct: 421 RTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPG 480 Query: 181 CSLIEVNNEVHEFVVGDDSNPFLDEMYNILELLALQQGRNETTNKTLLKEISSV 342 SLIEVNN V EFV GD+S PF E+ +L+L Q ++ TN L I V Sbjct: 481 GSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFTSHQDQDVITNNNALAFIGIV 534