BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032252
         (444 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516590.1| pentatricopeptide repeat-containing protein,...   109   2e-22
ref|XP_002884209.1| pentatricopeptide repeat-containing protein ...   104   9e-21
ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containi...   102   4e-20
ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containi...   101   6e-20
ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis th...   100   1e-19

>ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544410|gb|EEF45931.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  109 bits (273), Expect = 2e-22
 Identities = 56/97 (57%), Positives = 66/97 (68%)
 Frame = +1

Query: 1   RTCRDLETAVIAMEQLPKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXXXXPG 180
           RT  ++E AVIAME L +LEPDD GNYVLLSNI+ADLG+W+ VS              PG
Sbjct: 407 RTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPG 466

Query: 181 CSLIEVNNEVHEFVVGDDSNPFLDEMYNILELLALQQ 291
           CSLIEVNN   EFV GDDS P+  E++ +LELLA  Q
Sbjct: 467 CSLIEVNNVAQEFVSGDDSKPYSKEIFWLLELLAFHQ 503


>ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330049|gb|EFH60468.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 534

 Score =  104 bits (259), Expect = 9e-21
 Identities = 53/114 (46%), Positives = 71/114 (62%)
 Frame = +1

Query: 1   RTCRDLETAVIAMEQLPKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXXXXPG 180
           RT  +L+ A++AM+ L ++EPDD+GNYVLL+NI+ADLG+WE VS              PG
Sbjct: 421 RTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPG 480

Query: 181 CSLIEVNNEVHEFVVGDDSNPFLDEMYNILELLALQQGRNETTNKTLLKEISSV 342
           CSLIEVNN V EFV GD+S PF  E+  +L+L    Q ++   N   L  I  +
Sbjct: 481 CSLIEVNNIVQEFVAGDNSKPFWTEISLVLQLFTSHQDQDVIKNNNALAFIGMI 534


>ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  102 bits (253), Expect = 4e-20
 Identities = 56/103 (54%), Positives = 68/103 (66%), Gaps = 3/103 (2%)
 Frame = +1

Query: 4   TCR---DLETAVIAMEQLPKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXXXX 174
           +CR   +LE AV+AMEQL KLEP++ GNYVLL+NI+A L +WE VS              
Sbjct: 416 SCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKT 475

Query: 175 PGCSLIEVNNEVHEFVVGDDSNPFLDEMYNILELLALQQGRNE 303
           PGCSLIEVNN V EFV GDDS PF  E++ IL+ L L Q R +
Sbjct: 476 PGCSLIEVNNLVQEFVSGDDSKPFSQEVFWILKGLTLHQIRTK 518


>ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  101 bits (252), Expect = 6e-20
 Identities = 52/99 (52%), Positives = 64/99 (64%)
 Frame = +1

Query: 1   RTCRDLETAVIAMEQLPKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXXXXPG 180
           R+  +LE AVIAME L +LEP D GNYVLLSN++ADLG+W+ VS              PG
Sbjct: 429 RSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPG 488

Query: 181 CSLIEVNNEVHEFVVGDDSNPFLDEMYNILELLALQQGR 297
           CS IEV+N V EF  GDDS PF   +Y +L+LL + Q R
Sbjct: 489 CSSIEVDNMVQEFASGDDSKPFSKAIYRVLKLLVMHQRR 527


>ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
           gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g20540 gi|4586036|gb|AAD25654.1| unknown protein
           [Arabidopsis thaliana] gi|67633530|gb|AAY78689.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana] gi|330251931|gb|AEC07025.1| mitochondrial
           editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  100 bits (250), Expect = 1e-19
 Identities = 54/114 (47%), Positives = 71/114 (62%)
 Frame = +1

Query: 1   RTCRDLETAVIAMEQLPKLEPDDIGNYVLLSNIFADLGEWESVSXXXXXXXXXXXXXXPG 180
           RT  +L+ A++AM+ L +LEP+D+GNYVLL+NI+ADLG+WE VS              PG
Sbjct: 421 RTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPG 480

Query: 181 CSLIEVNNEVHEFVVGDDSNPFLDEMYNILELLALQQGRNETTNKTLLKEISSV 342
            SLIEVNN V EFV GD+S PF  E+  +L+L    Q ++  TN   L  I  V
Sbjct: 481 GSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFTSHQDQDVITNNNALAFIGIV 534