BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032238
         (450 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37903.3| unnamed protein product [Vitis vinifera]              188   3e-46
ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containi...   188   3e-46
ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...   181   7e-44
ref|NP_179705.1| pentatricopeptide repeat-containing protein [Ar...   165   3e-39
ref|XP_002880355.1| pentatricopeptide repeat-containing protein ...   160   1e-37

>emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  188 bits (478), Expect = 3e-46
 Identities = 91/148 (61%), Positives = 113/148 (76%)
 Frame = -3

Query: 448 KVGDMEMARRLFDEIPEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXX 269
           K GDM+ A  LF E+PE NPVSWT+LISGY R+G+G +AL+LF++MM+  +RPDQFTF  
Sbjct: 270 KWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSS 329

Query: 268 XXXXXXXXXXLKHGKQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKL 89
                     LKHGKQIH+YL+R  F+PN IVVS+LIDMYSKCGSLG+GR VFD M +KL
Sbjct: 330 CLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKL 389

Query: 88  DIVLWNTMLSTLAQHGLGDECIHLFHHM 5
           D+VLWNT++S LAQHG G+E I +   M
Sbjct: 390 DVVLWNTIISALAQHGCGEEAIQMLDDM 417



 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 48/148 (32%), Positives = 82/148 (55%)
 Frame = -3

Query: 448 KVGDMEMARRLFDEIPEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXX 269
           K+G ++ AR+LFD++PE + VSW +++  + + G   EAL+ +SE    GI+ + F+F  
Sbjct: 138 KLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAG 197

Query: 268 XXXXXXXXXXLKHGKQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKL 89
                     +   +Q+H  ++   F  N ++ SS++D Y KCG +G  R +FD+M  + 
Sbjct: 198 VLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSAR- 256

Query: 88  DIVLWNTMLSTLAQHGLGDECIHLFHHM 5
           D++ W TM+S  A+ G       LF  M
Sbjct: 257 DVLAWTTMVSGYAKWGDMKSANELFVEM 284


>ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  188 bits (478), Expect = 3e-46
 Identities = 91/148 (61%), Positives = 113/148 (76%)
 Frame = -3

Query: 448 KVGDMEMARRLFDEIPEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXX 269
           K GDM+ A  LF E+PE NPVSWT+LISGY R+G+G +AL+LF++MM+  +RPDQFTF  
Sbjct: 270 KWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSS 329

Query: 268 XXXXXXXXXXLKHGKQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKL 89
                     LKHGKQIH+YL+R  F+PN IVVS+LIDMYSKCGSLG+GR VFD M +KL
Sbjct: 330 CLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKL 389

Query: 88  DIVLWNTMLSTLAQHGLGDECIHLFHHM 5
           D+VLWNT++S LAQHG G+E I +   M
Sbjct: 390 DVVLWNTIISALAQHGCGEEAIQMLDDM 417



 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 48/148 (32%), Positives = 82/148 (55%)
 Frame = -3

Query: 448 KVGDMEMARRLFDEIPEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXX 269
           K+G ++ AR+LFD++PE + VSW +++  + + G   EAL+ +SE    GI+ + F+F  
Sbjct: 138 KLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAG 197

Query: 268 XXXXXXXXXXLKHGKQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKL 89
                     +   +Q+H  ++   F  N ++ SS++D Y KCG +G  R +FD+M  + 
Sbjct: 198 VLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSAR- 256

Query: 88  DIVLWNTMLSTLAQHGLGDECIHLFHHM 5
           D++ W TM+S  A+ G       LF  M
Sbjct: 257 DVLAWTTMVSGYAKWGDMKSANELFVEM 284


>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score =  181 bits (458), Expect = 7e-44
 Identities = 91/146 (62%), Positives = 105/146 (71%)
 Frame = -3

Query: 442 GDMEMARRLFDEIPEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXXXX 263
           GD+E AR LFD +PE NPV+WTSLI+GY R  LG +AL+LF++MM   IRPDQFTF    
Sbjct: 263 GDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCL 322

Query: 262 XXXXXXXXLKHGKQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKLDI 83
                   L HGKQIH YLIR   +PN IVVSSLIDMYSKCG L VGR VFD M DK D+
Sbjct: 323 CASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDV 382

Query: 82  VLWNTMLSTLAQHGLGDECIHLFHHM 5
           VLWNT++S+LAQHG G E I +F  M
Sbjct: 383 VLWNTIISSLAQHGRGQEAIQMFDDM 408



 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 49/148 (33%), Positives = 84/148 (56%)
 Frame = -3

Query: 448 KVGDMEMARRLFDEIPEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXX 269
           K+G ++ AR+LFD++PE + VSW +++  Y +SG   +AL+ + E+   GI  ++++F  
Sbjct: 129 KLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAG 188

Query: 268 XXXXXXXXXXLKHGKQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKL 89
                     L+  KQ H  ++   F  N ++ SS++D Y+KC  +G  R +FD+M  + 
Sbjct: 189 LLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIR- 247

Query: 88  DIVLWNTMLSTLAQHGLGDECIHLFHHM 5
           D++ W TM+S  AQ G  +    LF  M
Sbjct: 248 DVLAWTTMVSGYAQWGDVEAARELFDLM 275



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
 Frame = -3

Query: 448 KVGDMEMARRLFDEIPEP-NPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFX 272
           K G +E+ R +FD + +  + V W ++IS   + G G EA+++F +M+  G++PD+ T  
Sbjct: 362 KCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLI 421

Query: 271 XXXXXXXXXXXLKHGKQIHSYLIR-RVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDD 95
                      ++ G +++  +       PN    + LID+  + G      +  ++M  
Sbjct: 422 VLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPC 481

Query: 94  KLDIVLWNTMLSTLAQHG 41
           K +  +WN +L     HG
Sbjct: 482 KPNDEIWNALLGVCRMHG 499


>ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g21090 gi|4803934|gb|AAD29807.1| unknown protein
           [Arabidopsis thaliana] gi|330252028|gb|AEC07122.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 597

 Score =  165 bits (418), Expect = 3e-39
 Identities = 82/148 (55%), Positives = 101/148 (68%)
 Frame = -3

Query: 448 KVGDMEMARRLFDEIPEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXX 269
           K+GDME A +LF E+PE NPVSWT+LI+GYVR G G  AL LF +M+  G++P+QFTF  
Sbjct: 257 KLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSS 316

Query: 268 XXXXXXXXXXLKHGKQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKL 89
                     L+HGK+IH Y+IR   +PNAIV+SSLIDMYSK GSL     VF   DDK 
Sbjct: 317 CLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKH 376

Query: 88  DIVLWNTMLSTLAQHGLGDECIHLFHHM 5
           D V WNTM+S LAQHGLG + + +   M
Sbjct: 377 DCVFWNTMISALAQHGLGHKALRMLDDM 404



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 48/148 (32%), Positives = 77/148 (52%)
 Frame = -3

Query: 448 KVGDMEMARRLFDEIPEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXX 269
           K G +  AR +FD +PE + VSW +++ GY + G   EAL  + E    GI+ ++F+F  
Sbjct: 125 KSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAG 184

Query: 268 XXXXXXXXXXLKHGKQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKL 89
                     L+  +Q H  ++   F  N ++  S+ID Y+KCG +   +  FD+M  K 
Sbjct: 185 LLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVK- 243

Query: 88  DIVLWNTMLSTLAQHGLGDECIHLFHHM 5
           DI +W T++S  A+ G  +    LF  M
Sbjct: 244 DIHIWTTLISGYAKLGDMEAAEKLFCEM 271


>ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297326194|gb|EFH56614.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 599

 Score =  160 bits (404), Expect = 1e-37
 Identities = 82/148 (55%), Positives = 99/148 (66%)
 Frame = -3

Query: 448 KVGDMEMARRLFDEIPEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXX 269
           K+GDME A +LF E+PE NPVSWT+LI+GYVR G G  AL LF +M+   ++P+QFTF  
Sbjct: 257 KLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSS 316

Query: 268 XXXXXXXXXXLKHGKQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKL 89
                     L+HGKQIH Y+IR   +PNAIV SSLIDMYSK GSL     VF    DK 
Sbjct: 317 CLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICYDKQ 376

Query: 88  DIVLWNTMLSTLAQHGLGDECIHLFHHM 5
           D VLWNTM+S LAQHGLG + + +   M
Sbjct: 377 DCVLWNTMISALAQHGLGHKALQMLDDM 404



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 49/148 (33%), Positives = 78/148 (52%)
 Frame = -3

Query: 448 KVGDMEMARRLFDEIPEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXX 269
           K G +  AR +FD +PE + VSW +++ GY + G   EAL  F E+   GI+ ++F+F  
Sbjct: 125 KSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAG 184

Query: 268 XXXXXXXXXXLKHGKQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKL 89
                     L+  +Q H  ++   F  N ++  S+ID Y+KCG +   +  FD+M  K 
Sbjct: 185 LLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVK- 243

Query: 88  DIVLWNTMLSTLAQHGLGDECIHLFHHM 5
           DI +W T++S  A+ G  +    LF  M
Sbjct: 244 DIHIWTTLISGYAKLGDMEAADKLFREM 271