BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032186
         (220 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase s...    73   2e-11
sp|Q04450.1|RBS2_MESCR RecName: Full=Ribulose bisphosphate carbo...    73   2e-11
dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...    73   3e-11
gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/ox...    73   3e-11
sp|P31333.2|RBS_GOSHI RecName: Full=Ribulose bisphosphate carbox...    72   5e-11

>gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
           [Mesembryanthemum crystallinum]
          Length = 180

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/53 (67%), Positives = 41/53 (77%)
 Frame = +2

Query: 62  MPLASINNCATPAQASMVTPFIGLKSTSAFPVTRKVNDITFISSNGGKVSCMQ 220
           M  A++    TPAQASMV PF GLKS SAFPVT+K NDIT I+SNGG+V CMQ
Sbjct: 5   MSNAAVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSNDITSIASNGGRVQCMQ 57


>sp|Q04450.1|RBS2_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
           chloroplastic; Short=RuBisCO small subunit 2; Flags:
           Precursor gi|304444|gb|AAA03694.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Mesembryanthemum crystallinum]
          Length = 180

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/53 (67%), Positives = 41/53 (77%)
 Frame = +2

Query: 62  MPLASINNCATPAQASMVTPFIGLKSTSAFPVTRKVNDITFISSNGGKVSCMQ 220
           M  A++    TPAQASMV PF GLKS SAFPVT+K NDIT I+SNGG+V CMQ
Sbjct: 5   MSNAAVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSNDITSIASNGGRVQCMQ 57


>dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Panax ginseng]
          Length = 183

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = +2

Query: 89  ATPAQASMVTPFIGLKSTSAFPVTRKVNDITFISSNGGKVSCMQ 220
           A PAQASMV PF GLKST+AFPVTRKVNDIT + SNGG+V CM+
Sbjct: 17  AVPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMK 60


>gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Aralia elata]
          Length = 183

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = +2

Query: 89  ATPAQASMVTPFIGLKSTSAFPVTRKVNDITFISSNGGKVSCMQ 220
           A PAQASMV PF GLKST+AFPVTRKVNDIT + SNGG+V CM+
Sbjct: 17  AAPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMK 60


>sp|P31333.2|RBS_GOSHI RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|450505|emb|CAA38026.1| ribulose
           bisphosphate carboxylase [Gossypium hirsutum]
           gi|371942044|gb|AEX60834.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit [Gossypium hirsutum]
           gi|406366448|gb|AFS41721.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit (chloroplast)
           [Gossypium arboreum] gi|406366458|gb|AFS41726.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit (chloroplast) [Gossypium hirsutum]
           gi|406366488|gb|AFS41741.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit (chloroplast)
           [Gossypium tomentosum] gi|406366504|gb|AFS41749.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit (chloroplast) [Gossypium mustelinum]
           gi|406366516|gb|AFS41755.1| ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit (chloroplast)
           [Gossypium darwinii]
          Length = 182

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 34/47 (72%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
 Frame = +2

Query: 83  NCATPAQASMVTPFIGLKSTSAFPVTRKV-NDITFISSNGGKVSCMQ 220
           NC++PAQA+MV PF GLKS SAFPVTRK  NDIT ++SNGG+V CMQ
Sbjct: 15  NCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQ 61