BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032178
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   157   9e-37
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     140   1e-31
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   137   1e-30
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   136   2e-30
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   135   3e-30

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  157 bits (397), Expect = 9e-37
 Identities = 73/105 (69%), Positives = 90/105 (85%)
 Frame = +1

Query: 1   EVLAIFVMWKKLIETQTGRKIKRLRTDNGGEYTSDPFLQVCQNEGIERHFTVKDMPQQNG 180
           +VL IF+ WK  +E QTGRKIK LRTDNGGEY SDPFL+VCQ+ GI RHFT++  PQQNG
Sbjct: 513 DVLEIFLKWKDEVENQTGRKIKVLRTDNGGEYKSDPFLKVCQDCGIIRHFTIRKTPQQNG 572

Query: 181 IAERMNRTLMEKVRCMLSNAGLGKAFWAEAMSYACYLINRLPSAA 315
           ++ERMN+ L+EKVRCMLSNA LG+ FWAEA++YA +L+NRLPS+A
Sbjct: 573 VSERMNKILVEKVRCMLSNAELGRKFWAEAVTYAQHLVNRLPSSA 617


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  140 bits (353), Expect = 1e-31
 Identities = 69/105 (65%), Positives = 79/105 (75%)
 Frame = +1

Query: 1   EVLAIFVMWKKLIETQTGRKIKRLRTDNGGEYTSDPFLQVCQNEGIERHFTVKDMPQQNG 180
           EV   F  WK  +  QTGRKIK LR+DNGGEY    FLQ+C++EGI RHFTVK  PQQNG
Sbjct: 496 EVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNG 555

Query: 181 IAERMNRTLMEKVRCMLSNAGLGKAFWAEAMSYACYLINRLPSAA 315
           +AERMNRTLMEK R M  +AGL + FWAEA ++ACYLINR PS A
Sbjct: 556 VAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRA 600


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  137 bits (344), Expect = 1e-30
 Identities = 66/102 (64%), Positives = 79/102 (77%)
 Frame = +1

Query: 1   EVLAIFVMWKKLIETQTGRKIKRLRTDNGGEYTSDPFLQVCQNEGIERHFTVKDMPQQNG 180
           E    F  WK L+E QTG+KIKRLRTDNG E+    F Q C++EGI RH TV++ PQQNG
Sbjct: 513 EAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNG 572

Query: 181 IAERMNRTLMEKVRCMLSNAGLGKAFWAEAMSYACYLINRLP 306
           +AERMN+TL+E+ RCMLSNAGL + FWAEA+S ACYLINR P
Sbjct: 573 VAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGP 614


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score =  136 bits (343), Expect = 2e-30
 Identities = 64/101 (63%), Positives = 77/101 (76%)
 Frame = +1

Query: 13  IFVMWKKLIETQTGRKIKRLRTDNGGEYTSDPFLQVCQNEGIERHFTVKDMPQQNGIAER 192
           +F  WK ++E QT RK+K LRTDNG E+ S  F   C++EGI RH+T+   PQQNG+AER
Sbjct: 505 VFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTIPHTPQQNGVAER 564

Query: 193 MNRTLMEKVRCMLSNAGLGKAFWAEAMSYACYLINRLPSAA 315
           MNRT++ K RCMLSNAGL K FWAEA+S ACYLINR PS A
Sbjct: 565 MNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYA 605


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  135 bits (341), Expect = 3e-30
 Identities = 64/101 (63%), Positives = 77/101 (76%)
 Frame = +1

Query: 13   IFVMWKKLIETQTGRKIKRLRTDNGGEYTSDPFLQVCQNEGIERHFTVKDMPQQNGIAER 192
            +F  WK ++E QT RK+K LRTDNG E+ S  F   C++EGI RH+TV   PQQNG+AER
Sbjct: 746  VFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAER 805

Query: 193  MNRTLMEKVRCMLSNAGLGKAFWAEAMSYACYLINRLPSAA 315
            MNRT++ K RC+LSNAGL K FWAEA+S ACYLINR PS A
Sbjct: 806  MNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYA 846