BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032177
         (391 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   124   1e-26
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              122   3e-26
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   119   3e-25
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   114   6e-24
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   112   2e-23

>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  124 bits (310), Expect = 1e-26
 Identities = 59/130 (45%), Positives = 82/130 (63%)
 Frame = +1

Query: 1   VPSALVTHLKFGLLTAADIEKISVLPVNVGTDITNAKLGLPNEASECSTCGAKSAKDCDG 180
           VPS L+  +KF + T  D+EKISV+ ++   +IT+ KLG+PN + +CSTCGAK  K C+G
Sbjct: 11  VPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEG 70

Query: 181 HLGMLTLPKDICHPYNLSVIVKILNSICPSCKSNKKESRNKGSGRKPKMSNIASHQPMGC 360
           H G++  P  I HPY L+ +V+ILN ICP CKS ++    KG+      S     +  GC
Sbjct: 71  HFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGAD-----SGSRRLRSKGC 125

Query: 361 KYCAESSKKW 390
           KYCA +S  W
Sbjct: 126 KYCAANSNDW 135


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  122 bits (306), Expect = 3e-26
 Identities = 59/130 (45%), Positives = 83/130 (63%)
 Frame = +1

Query: 1   VPSALVTHLKFGLLTAADIEKISVLPVNVGTDITNAKLGLPNEASECSTCGAKSAKDCDG 180
           VPS L+  +KF + T  D+EKISV+ ++   +IT+ KLG+PN + +CSTCGAK  K C+G
Sbjct: 11  VPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEG 70

Query: 181 HLGMLTLPKDICHPYNLSVIVKILNSICPSCKSNKKESRNKGSGRKPKMSNIASHQPMGC 360
           H G++  P  I HPY L+ +V+ILN ICP CKS ++       G+  K+  + S    GC
Sbjct: 71  HFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQ-------GQWVKVRRLRS---KGC 120

Query: 361 KYCAESSKKW 390
           KYCA +S  W
Sbjct: 121 KYCAANSNDW 130


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 1475

 Score =  119 bits (297), Expect = 3e-25
 Identities = 51/99 (51%), Positives = 75/99 (75%)
 Frame = +1

Query: 1   VPSALVTHLKFGLLTAADIEKISVLPVNVGTDITNAKLGLPNEASECSTCGAKSAKDCDG 180
           +PSAL+T + FG+ T A+ EK+SVL ++  +++T++KLGLPN  ++CSTCG+K  K C+G
Sbjct: 12  LPSALLTAITFGVSTEAEKEKLSVLTIDTVSEVTDSKLGLPNPTNQCSTCGSKDLKSCEG 71

Query: 181 HLGMLTLPKDICHPYNLSVIVKILNSICPSCKSNKKESR 297
           H G++  P  I HPY LS +V+ILN +CP CKS +KES+
Sbjct: 72  HFGVIKFPFTILHPYYLSEVVRILNQVCPKCKSIRKESK 110


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
           sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
           QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
           1-like [Cucumis sativus]
          Length = 1469

 Score =  114 bits (286), Expect = 6e-24
 Identities = 52/130 (40%), Positives = 78/130 (60%)
 Frame = +1

Query: 1   VPSALVTHLKFGLLTAADIEKISVLPVNVGTDITNAKLGLPNEASECSTCGAKSAKDCDG 180
           +PS L+T + F +    DIE I+V+ V+   ++++ KLGLPN + +C+TCGA S K C+G
Sbjct: 11  IPSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQCTTCGASSLKFCEG 70

Query: 181 HLGMLTLPKDICHPYNLSVIVKILNSICPSCKSNKKESRNKGSGRKPKMSNIASHQPMGC 360
           H G++  P  I HPY LS + ++LN +CP CKS ++E   K             ++P GC
Sbjct: 71  HFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDPTSDY-----NRPKGC 125

Query: 361 KYCAESSKKW 390
           +YC  S K W
Sbjct: 126 RYCFGSLKDW 135


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 1517

 Score =  112 bits (281), Expect = 2e-23
 Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 29/159 (18%)
 Frame = +1

Query: 1   VPSALVTHLKFGLLTAADIEKISVLPVNVGTDITNAKLGLPNEASECSTCGAKSAKDCDG 180
           VPSAL+T + FG+LT A+ EK+SVL ++  +++T+ KLGLPN +S+CSTCG++  K C+G
Sbjct: 11  VPSALITGMAFGVLTEAETEKLSVLNIDAVSEVTDPKLGLPNPSSQCSTCGSRDLKSCEG 70

Query: 181 -----------------------------HLGMLTLPKDICHPYNLSVIVKILNSICPSC 273
                                        H G++  P  I HPY LS +V+ILN ICP C
Sbjct: 71  IVDVDLNSADRLASIATGDCANILLSLSGHFGVINFPYTIVHPYFLSEVVQILNKICPGC 130

Query: 274 KSNKKESRNKGSGRKPKMSNIASHQPMGCKYCAESSKKW 390
           KS +         +  ++    + Q  GCKYCA +S  W
Sbjct: 131 KSIR-------LAKATELITKENPQRKGCKYCAGNSLGW 162