BLASTX nr result
ID: Coptis25_contig00032091
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00032091 (446 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containi... 276 1e-72 ref|XP_002520332.1| pentatricopeptide repeat-containing protein,... 273 1e-71 ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containi... 268 4e-70 ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. l... 254 7e-66 ref|NP_177865.2| pentatricopeptide repeat-containing protein [Ar... 254 7e-66 >ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Vitis vinifera] Length = 432 Score = 276 bits (706), Expect = 1e-72 Identities = 124/148 (83%), Positives = 136/148 (91%) Frame = +1 Query: 1 GEEGLVNEALALFYRMKQFHCKPDVYAYNTIICALCRVGKFKKARFLLEQMELPGFRCPP 180 GEEGL N+ALA FYRMKQFHCKPDVYAYNTII ALCRVG F+KARFLLEQMELPGFRCPP Sbjct: 168 GEEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPP 227 Query: 181 DTYTYTIFISFYCKRCLQTGCRKAIRRRLWEANHLFRLMVFKGFVPDAVTYNCLIDACCK 360 D++TYTI I YCK LQTGCRKA+RRRLWEANHLFR+M+FKGFVPD VTYNCLID CCK Sbjct: 228 DSFTYTILIGSYCKYSLQTGCRKAVRRRLWEANHLFRIMLFKGFVPDVVTYNCLIDGCCK 287 Query: 361 TYRIDRALELFDDMIRKGCLPNRITYNS 444 TYRI+RALELFDDM ++GC+PNR+TYNS Sbjct: 288 TYRIERALELFDDMNKRGCVPNRVTYNS 315 >ref|XP_002520332.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540551|gb|EEF42118.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 441 Score = 273 bits (698), Expect = 1e-71 Identities = 123/148 (83%), Positives = 136/148 (91%) Frame = +1 Query: 1 GEEGLVNEALALFYRMKQFHCKPDVYAYNTIICALCRVGKFKKARFLLEQMELPGFRCPP 180 GEEGLV EAL+LFYRMK++HCKPDVYAYNTII ALCR+G FKKAR+LLEQMELPGF CPP Sbjct: 177 GEEGLVKEALSLFYRMKKYHCKPDVYAYNTIIYALCRIGNFKKARYLLEQMELPGFYCPP 236 Query: 181 DTYTYTIFISFYCKRCLQTGCRKAIRRRLWEANHLFRLMVFKGFVPDAVTYNCLIDACCK 360 DT+TYTI IS YCK LQTGCRKAIRRRLWEANHLFR+M+FKGF PD VTYNCLID CCK Sbjct: 237 DTFTYTIMISSYCKYSLQTGCRKAIRRRLWEANHLFRIMLFKGFAPDVVTYNCLIDGCCK 296 Query: 361 TYRIDRALELFDDMIRKGCLPNRITYNS 444 TYRI+RALELF+DM R+GC+PNR+TYNS Sbjct: 297 TYRIERALELFEDMNRRGCVPNRVTYNS 324 >ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Cucumis sativus] gi|449518241|ref|XP_004166151.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Cucumis sativus] Length = 445 Score = 268 bits (684), Expect = 4e-70 Identities = 122/148 (82%), Positives = 131/148 (88%) Frame = +1 Query: 1 GEEGLVNEALALFYRMKQFHCKPDVYAYNTIICALCRVGKFKKARFLLEQMELPGFRCPP 180 GEEGLVNEAL FYRMKQFHCKPDVYAYNT+I LCR+G FKKARFLLEQMELPGFRCPP Sbjct: 182 GEEGLVNEALTAFYRMKQFHCKPDVYAYNTVINVLCRIGNFKKARFLLEQMELPGFRCPP 241 Query: 181 DTYTYTIFISFYCKRCLQTGCRKAIRRRLWEANHLFRLMVFKGFVPDAVTYNCLIDACCK 360 D +TYTI IS YCK LQTGCRKAIRRRLWEANHLFR+M+FKGF PD VTYN LID CCK Sbjct: 242 DIFTYTILISSYCKYSLQTGCRKAIRRRLWEANHLFRIMLFKGFSPDVVTYNSLIDGCCK 301 Query: 361 TYRIDRALELFDDMIRKGCLPNRITYNS 444 TYRI RALELF+DM ++GC PNR+TYNS Sbjct: 302 TYRIQRALELFEDMSKRGCTPNRLTYNS 329 >ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis lyrata subsp. lyrata] Length = 459 Score = 254 bits (648), Expect = 7e-66 Identities = 116/148 (78%), Positives = 130/148 (87%) Frame = +1 Query: 1 GEEGLVNEALALFYRMKQFHCKPDVYAYNTIICALCRVGKFKKARFLLEQMELPGFRCPP 180 GEEG V EALA FYRMK++HCKPDVYAYNTII ALCRVG FKKARFLL+QM+LPGFR PP Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235 Query: 181 DTYTYTIFISFYCKRCLQTGCRKAIRRRLWEANHLFRLMVFKGFVPDAVTYNCLIDACCK 360 DTYTYTI IS YC+ +QTGCRKAIRRR+WEAN +FR M+F+GFVPD VTYNCLID CCK Sbjct: 236 DTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCK 295 Query: 361 TYRIDRALELFDDMIRKGCLPNRITYNS 444 T RI RALELF+DM KGC+PN++TYNS Sbjct: 296 TNRIGRALELFEDMKTKGCVPNQVTYNS 323 >ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77405 gi|91806103|gb|ABE65780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332197853|gb|AEE35974.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 458 Score = 254 bits (648), Expect = 7e-66 Identities = 116/148 (78%), Positives = 130/148 (87%) Frame = +1 Query: 1 GEEGLVNEALALFYRMKQFHCKPDVYAYNTIICALCRVGKFKKARFLLEQMELPGFRCPP 180 GEEG V EALA FYRMK++HCKPDVYAYNTII ALCRVG FKKARFLL+QM+LPGFR PP Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235 Query: 181 DTYTYTIFISFYCKRCLQTGCRKAIRRRLWEANHLFRLMVFKGFVPDAVTYNCLIDACCK 360 DTYTYTI IS YC+ +QTGCRKAIRRR+WEAN +FR M+F+GFVPD VTYNCLID CCK Sbjct: 236 DTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCK 295 Query: 361 TYRIDRALELFDDMIRKGCLPNRITYNS 444 T RI RALELF+DM KGC+PN++TYNS Sbjct: 296 TNRIGRALELFEDMKTKGCVPNQVTYNS 323