BLASTX nr result
ID: Coptis25_contig00032052
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00032052
(718 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI33742.3| unnamed protein product [Vitis vinifera] 353 2e-95
ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containi... 353 2e-95
emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera] 353 2e-95
ref|XP_002332237.1| predicted protein [Populus trichocarpa] gi|2... 348 5e-94
ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containi... 333 2e-89
>emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 353 bits (907), Expect = 2e-95
Identities = 168/203 (82%), Positives = 185/203 (91%)
Frame = -1
Query: 718 VLWGTLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGNWDGVARMRTLM 539
VLWGTLL +CRLHG +ALGE I E LV+ LANSGTYILLSNIYAA GNWDGVAR+RT+M
Sbjct: 360 VLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMM 419
Query: 538 KDSGIQKEPGCSSIEVHNKVHEFLVGDLKHPKSKDIYVMLEELYSRLKADGYTPQTDLVL 359
KDSG++KEPGCSSIEV+NKVHEFL G L HPK K+IY+MLEE+ LK+ GYTPQTD+VL
Sbjct: 420 KDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVL 479
Query: 358 HDIGETEKEQSLGVHSEKLAIAFGLISTQPGTTIKIVKNLRVCSDCHTVTKLISKITGRK 179
HDIGETEKE+SL VHSEKLAIAFGLI+TQPGTTIKIVKNLRVC+DCH VTKLISKITGRK
Sbjct: 480 HDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRK 539
Query: 178 IVVRDRNRFHHFVDGSCSCGDYW 110
IVVRDRNRFHHFV+GSCSCGDYW
Sbjct: 540 IVVRDRNRFHHFVNGSCSCGDYW 562
>ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 353 bits (907), Expect = 2e-95
Identities = 168/203 (82%), Positives = 185/203 (91%)
Frame = -1
Query: 718 VLWGTLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGNWDGVARMRTLM 539
VLWGTLL +CRLHG +ALGE I E LV+ LANSGTYILLSNIYAA GNWDGVAR+RT+M
Sbjct: 426 VLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMM 485
Query: 538 KDSGIQKEPGCSSIEVHNKVHEFLVGDLKHPKSKDIYVMLEELYSRLKADGYTPQTDLVL 359
KDSG++KEPGCSSIEV+NKVHEFL G L HPK K+IY+MLEE+ LK+ GYTPQTD+VL
Sbjct: 486 KDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVL 545
Query: 358 HDIGETEKEQSLGVHSEKLAIAFGLISTQPGTTIKIVKNLRVCSDCHTVTKLISKITGRK 179
HDIGETEKE+SL VHSEKLAIAFGLI+TQPGTTIKIVKNLRVC+DCH VTKLISKITGRK
Sbjct: 546 HDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRK 605
Query: 178 IVVRDRNRFHHFVDGSCSCGDYW 110
IVVRDRNRFHHFV+GSCSCGDYW
Sbjct: 606 IVVRDRNRFHHFVNGSCSCGDYW 628
>emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 353 bits (907), Expect = 2e-95
Identities = 168/203 (82%), Positives = 185/203 (91%)
Frame = -1
Query: 718 VLWGTLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGNWDGVARMRTLM 539
VLWGTLL +CRLHG +ALGE I E LV+ LANSGTYILLSNIYAA GNWDGVAR+RT+M
Sbjct: 373 VLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMM 432
Query: 538 KDSGIQKEPGCSSIEVHNKVHEFLVGDLKHPKSKDIYVMLEELYSRLKADGYTPQTDLVL 359
KDSG++KEPGCSSIEV+NKVHEFL G L HPK K+IY+MLEE+ LK+ GYTPQTD+VL
Sbjct: 433 KDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVL 492
Query: 358 HDIGETEKEQSLGVHSEKLAIAFGLISTQPGTTIKIVKNLRVCSDCHTVTKLISKITGRK 179
HDIGETEKE+SL VHSEKLAIAFGLI+TQPGTTIKIVKNLRVC+DCH VTKLISKITGRK
Sbjct: 493 HDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRK 552
Query: 178 IVVRDRNRFHHFVDGSCSCGDYW 110
IVVRDRNRFHHFV+GSCSCGDYW
Sbjct: 553 IVVRDRNRFHHFVNGSCSCGDYW 575
>ref|XP_002332237.1| predicted protein [Populus trichocarpa] gi|222831850|gb|EEE70327.1|
predicted protein [Populus trichocarpa]
Length = 444
Score = 348 bits (894), Expect = 5e-94
Identities = 161/203 (79%), Positives = 187/203 (92%)
Frame = -1
Query: 718 VLWGTLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGNWDGVARMRTLM 539
VLWGTLL +CRLHGN+ALGE IAE+LV+ LANSGTY+LLSNIYAAAGNW+GVAR+RTLM
Sbjct: 242 VLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLM 301
Query: 538 KDSGIQKEPGCSSIEVHNKVHEFLVGDLKHPKSKDIYVMLEELYSRLKADGYTPQTDLVL 359
K+SG +KEPGCSSIEV+NKVHEFL GDL+HPKS++IY MLEE+ LK GYTPQTD+VL
Sbjct: 302 KESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVL 361
Query: 358 HDIGETEKEQSLGVHSEKLAIAFGLISTQPGTTIKIVKNLRVCSDCHTVTKLISKITGRK 179
HD+ + +KE+SLGVHSEKLA+AFGLI+T+PGTTIKIVKNLRVC+DCH VTKLISKITGRK
Sbjct: 362 HDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRK 421
Query: 178 IVVRDRNRFHHFVDGSCSCGDYW 110
+V+RDRNRFHHFV+G CSCGDYW
Sbjct: 422 VVMRDRNRFHHFVNGLCSCGDYW 444
>ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 333 bits (855), Expect = 2e-89
Identities = 159/203 (78%), Positives = 180/203 (88%)
Frame = -1
Query: 718 VLWGTLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGNWDGVARMRTLM 539
VLWGTLL CRLH N+ LGE IA+FLV+ LANSGTY+LLSN+YAA GNW+GVA+MRTLM
Sbjct: 443 VLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLM 502
Query: 538 KDSGIQKEPGCSSIEVHNKVHEFLVGDLKHPKSKDIYVMLEELYSRLKADGYTPQTDLVL 359
K+ GI+KE GCSSIEV NKVHEF+ G+ KHPKSK+IYVML E+ S LKA GYTPQTD+VL
Sbjct: 503 KEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVL 562
Query: 358 HDIGETEKEQSLGVHSEKLAIAFGLISTQPGTTIKIVKNLRVCSDCHTVTKLISKITGRK 179
HD+ E +KEQSL VHSEKLAIAFGLIST+PGTT+KIVKNLRVCSDCHTV K+IS+ITGRK
Sbjct: 563 HDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRK 622
Query: 178 IVVRDRNRFHHFVDGSCSCGDYW 110
IV+RDRNRFHHF DG CSCGDYW
Sbjct: 623 IVMRDRNRFHHFEDGLCSCGDYW 645