BLASTX nr result
ID: Coptis25_contig00032019
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00032019 (381 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002338705.1| predicted protein [Populus trichocarpa] gi|2... 177 6e-43 ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containi... 176 2e-42 ref|XP_002529628.1| pentatricopeptide repeat-containing protein,... 175 3e-42 ref|XP_002891041.1| pentatricopeptide repeat-containing protein ... 171 4e-41 ref|NP_174603.1| pentatricopeptide repeat-containing protein [Ar... 169 2e-40 >ref|XP_002338705.1| predicted protein [Populus trichocarpa] gi|222873268|gb|EEF10399.1| predicted protein [Populus trichocarpa] Length = 263 Score = 177 bits (450), Expect = 6e-43 Identities = 85/131 (64%), Positives = 103/131 (78%), Gaps = 5/131 (3%) Frame = +2 Query: 2 KFGFGGYPVVQTSLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYARLGEIGNAV 181 K GFG YPVVQT+LIDSY R ++ AR +FDEMSERNVV+WTAMISGY RLGEI NA+ Sbjct: 53 KLGFGQYPVVQTALIDSYSRSGYDIGIARRMFDEMSERNVVSWTAMISGYTRLGEIENAI 112 Query: 182 LLFEQMPERDVPSWNSVIAGCAQNGLFLEAISFFRRMI-----EDHCELRPNHVTVVCVL 346 LF++MPERDVPSWN+VI+GCAQNGLF AI+ F++M+ H ++RPN TVVC L Sbjct: 113 TLFDEMPERDVPSWNAVISGCAQNGLFTRAITIFKKMVGLSLEVQHRDMRPNQTTVVCAL 172 Query: 347 SACGNLGMLRL 379 SACG+ GML + Sbjct: 173 SACGHTGMLHV 183 >ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein At1g33350-like [Vitis vinifera] Length = 573 Score = 176 bits (446), Expect = 2e-42 Identities = 90/129 (69%), Positives = 103/129 (79%), Gaps = 5/129 (3%) Frame = +2 Query: 8 GFGGYPVVQTSLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYARLGEIGNAVLL 187 GF YPVVQT+L+D+YLR S+V AR LFDEM+ERNVV+WTAMISGY RLG+IGNAVLL Sbjct: 185 GFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLL 244 Query: 188 FEQMPERDVPSWNSVIAGCAQNGLFLEAISFFRRMIEDHCEL-----RPNHVTVVCVLSA 352 FE+MPERDVPSWN++IAG QNGLF+EA+S FRRMI RPN VT VC LSA Sbjct: 245 FEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSA 304 Query: 353 CGNLGMLRL 379 CG+ GMLRL Sbjct: 305 CGHTGMLRL 313 >ref|XP_002529628.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530913|gb|EEF32773.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 400 Score = 175 bits (444), Expect = 3e-42 Identities = 83/126 (65%), Positives = 103/126 (81%) Frame = +2 Query: 2 KFGFGGYPVVQTSLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYARLGEIGNAV 181 K GF YPVVQT+L+DSY R S++ AR +FDEMSERNVV+WTAMI+GY R+GE+GNA+ Sbjct: 132 KLGFSQYPVVQTALVDSYSRFMSDIGCARQVFDEMSERNVVSWTAMITGYTRVGEVGNAI 191 Query: 182 LLFEQMPERDVPSWNSVIAGCAQNGLFLEAISFFRRMIEDHCELRPNHVTVVCVLSACGN 361 +F++MPERDVPSWNS+IAGC QNGLF+EAI FR+MI + +PN VT VC LSACG+ Sbjct: 192 SIFDKMPERDVPSWNSIIAGCTQNGLFIEAICLFRKMIL-VAQSKPNQVTTVCALSACGH 250 Query: 362 LGMLRL 379 GML+L Sbjct: 251 TGMLQL 256 >ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 586 Score = 171 bits (434), Expect = 4e-41 Identities = 84/126 (66%), Positives = 100/126 (79%) Frame = +2 Query: 2 KFGFGGYPVVQTSLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYARLGEIGNAV 181 K GF Y VVQT+L+ SY S++ AR LFDEMSERNVV+WTAM+SGYAR G+I NAV Sbjct: 154 KSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIFNAV 213 Query: 182 LLFEQMPERDVPSWNSVIAGCAQNGLFLEAISFFRRMIEDHCELRPNHVTVVCVLSACGN 361 LFE+MPERDVPSWN+++A C QNGLF+EA+S FRRMI D C +RPN VT+VCVLSAC Sbjct: 214 ALFEEMPERDVPSWNAILAACTQNGLFVEAVSLFRRMINDPC-IRPNEVTLVCVLSACAQ 272 Query: 362 LGMLRL 379 G L+L Sbjct: 273 TGTLQL 278 >ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350 gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana] gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana] gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 538 Score = 169 bits (428), Expect = 2e-40 Identities = 84/126 (66%), Positives = 98/126 (77%) Frame = +2 Query: 2 KFGFGGYPVVQTSLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYARLGEIGNAV 181 K GF Y VVQT+L+ SY S++ AR LFDEMSERNVV+WTAM+SGYAR G+I NAV Sbjct: 154 KSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAV 213 Query: 182 LLFEQMPERDVPSWNSVIAGCAQNGLFLEAISFFRRMIEDHCELRPNHVTVVCVLSACGN 361 LFE MPERDVPSWN+++A C QNGLFLEA+S FRRMI + +RPN VTVVCVLSAC Sbjct: 214 ALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEP-SIRPNEVTVVCVLSACAQ 272 Query: 362 LGMLRL 379 G L+L Sbjct: 273 TGTLQL 278