BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032019
         (381 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002338705.1| predicted protein [Populus trichocarpa] gi|2...   177   6e-43
ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containi...   176   2e-42
ref|XP_002529628.1| pentatricopeptide repeat-containing protein,...   175   3e-42
ref|XP_002891041.1| pentatricopeptide repeat-containing protein ...   171   4e-41
ref|NP_174603.1| pentatricopeptide repeat-containing protein [Ar...   169   2e-40

>ref|XP_002338705.1| predicted protein [Populus trichocarpa] gi|222873268|gb|EEF10399.1|
           predicted protein [Populus trichocarpa]
          Length = 263

 Score =  177 bits (450), Expect = 6e-43
 Identities = 85/131 (64%), Positives = 103/131 (78%), Gaps = 5/131 (3%)
 Frame = +2

Query: 2   KFGFGGYPVVQTSLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYARLGEIGNAV 181
           K GFG YPVVQT+LIDSY R   ++  AR +FDEMSERNVV+WTAMISGY RLGEI NA+
Sbjct: 53  KLGFGQYPVVQTALIDSYSRSGYDIGIARRMFDEMSERNVVSWTAMISGYTRLGEIENAI 112

Query: 182 LLFEQMPERDVPSWNSVIAGCAQNGLFLEAISFFRRMI-----EDHCELRPNHVTVVCVL 346
            LF++MPERDVPSWN+VI+GCAQNGLF  AI+ F++M+       H ++RPN  TVVC L
Sbjct: 113 TLFDEMPERDVPSWNAVISGCAQNGLFTRAITIFKKMVGLSLEVQHRDMRPNQTTVVCAL 172

Query: 347 SACGNLGMLRL 379
           SACG+ GML +
Sbjct: 173 SACGHTGMLHV 183


>ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  176 bits (446), Expect = 2e-42
 Identities = 90/129 (69%), Positives = 103/129 (79%), Gaps = 5/129 (3%)
 Frame = +2

Query: 8   GFGGYPVVQTSLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYARLGEIGNAVLL 187
           GF  YPVVQT+L+D+YLR  S+V  AR LFDEM+ERNVV+WTAMISGY RLG+IGNAVLL
Sbjct: 185 GFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLL 244

Query: 188 FEQMPERDVPSWNSVIAGCAQNGLFLEAISFFRRMIEDHCEL-----RPNHVTVVCVLSA 352
           FE+MPERDVPSWN++IAG  QNGLF+EA+S FRRMI           RPN VT VC LSA
Sbjct: 245 FEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSA 304

Query: 353 CGNLGMLRL 379
           CG+ GMLRL
Sbjct: 305 CGHTGMLRL 313


>ref|XP_002529628.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530913|gb|EEF32773.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 400

 Score =  175 bits (444), Expect = 3e-42
 Identities = 83/126 (65%), Positives = 103/126 (81%)
 Frame = +2

Query: 2   KFGFGGYPVVQTSLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYARLGEIGNAV 181
           K GF  YPVVQT+L+DSY R  S++  AR +FDEMSERNVV+WTAMI+GY R+GE+GNA+
Sbjct: 132 KLGFSQYPVVQTALVDSYSRFMSDIGCARQVFDEMSERNVVSWTAMITGYTRVGEVGNAI 191

Query: 182 LLFEQMPERDVPSWNSVIAGCAQNGLFLEAISFFRRMIEDHCELRPNHVTVVCVLSACGN 361
            +F++MPERDVPSWNS+IAGC QNGLF+EAI  FR+MI    + +PN VT VC LSACG+
Sbjct: 192 SIFDKMPERDVPSWNSIIAGCTQNGLFIEAICLFRKMIL-VAQSKPNQVTTVCALSACGH 250

Query: 362 LGMLRL 379
            GML+L
Sbjct: 251 TGMLQL 256


>ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336883|gb|EFH67300.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 586

 Score =  171 bits (434), Expect = 4e-41
 Identities = 84/126 (66%), Positives = 100/126 (79%)
 Frame = +2

Query: 2   KFGFGGYPVVQTSLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYARLGEIGNAV 181
           K GF  Y VVQT+L+ SY    S++  AR LFDEMSERNVV+WTAM+SGYAR G+I NAV
Sbjct: 154 KSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIFNAV 213

Query: 182 LLFEQMPERDVPSWNSVIAGCAQNGLFLEAISFFRRMIEDHCELRPNHVTVVCVLSACGN 361
            LFE+MPERDVPSWN+++A C QNGLF+EA+S FRRMI D C +RPN VT+VCVLSAC  
Sbjct: 214 ALFEEMPERDVPSWNAILAACTQNGLFVEAVSLFRRMINDPC-IRPNEVTLVCVLSACAQ 272

Query: 362 LGMLRL 379
            G L+L
Sbjct: 273 TGTLQL 278


>ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g33350 gi|12322383|gb|AAG51215.1|AC051630_12 unknown
           protein; 15445-13829 [Arabidopsis thaliana]
           gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein,
           putative [Arabidopsis thaliana]
           gi|332193465|gb|AEE31586.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 538

 Score =  169 bits (428), Expect = 2e-40
 Identities = 84/126 (66%), Positives = 98/126 (77%)
 Frame = +2

Query: 2   KFGFGGYPVVQTSLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYARLGEIGNAV 181
           K GF  Y VVQT+L+ SY    S++  AR LFDEMSERNVV+WTAM+SGYAR G+I NAV
Sbjct: 154 KSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAV 213

Query: 182 LLFEQMPERDVPSWNSVIAGCAQNGLFLEAISFFRRMIEDHCELRPNHVTVVCVLSACGN 361
            LFE MPERDVPSWN+++A C QNGLFLEA+S FRRMI +   +RPN VTVVCVLSAC  
Sbjct: 214 ALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEP-SIRPNEVTVVCVLSACAQ 272

Query: 362 LGMLRL 379
            G L+L
Sbjct: 273 TGTLQL 278