BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00032003
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   187   1e-45
sp|P29684.1|RBS_HEVBR RecName: Full=Ribulose bisphosphate carbox...   185   3e-45
gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/ox...   182   2e-44
ref|XP_002532149.1| Ribulose bisphosphate carboxylase small chai...   181   4e-44
dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   181   7e-44

>dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Eucalyptus globulus]
          Length = 181

 Score =  187 bits (474), Expect = 1e-45
 Identities = 84/115 (73%), Positives = 103/115 (89%)
 Frame = -3

Query: 347 VMSTAVVASVNRATPAQASMVAPFTGLKSTATFPTSRKSADITTIASNGGKVQCMQVWPP 168
           ++S+A VA+VNRA+PAQASMVAPFTGLKS + FP +RKSADIT++ASNGG+VQCMQVWPP
Sbjct: 5   IVSSAAVAAVNRASPAQASMVAPFTGLKSASAFPVTRKSADITSLASNGGRVQCMQVWPP 64

Query: 167 RGKKKFETLSYLPPLTKGELAKEVDYLLRNKWIPCLEFSVRGGFVYREHHRSPGY 3
            GKKKFETLSYLPPL++ EL KE++YLLR  W+PCLEF +  GFVYR++H+SPGY
Sbjct: 65  IGKKKFETLSYLPPLSREELLKEIEYLLRMNWVPCLEFELEKGFVYRDNHKSPGY 119


>sp|P29684.1|RBS_HEVBR RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|168217|gb|AAA33361.1|
           ribulose-1,5-bisphosphate carboxylase small subunit
           [Hevea brasiliensis]
          Length = 183

 Score =  185 bits (470), Expect = 3e-45
 Identities = 87/116 (75%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
 Frame = -3

Query: 347 VMSTAVVASVNRATPAQASMVAPFTGLKSTATFPTSRKSA-DITTIASNGGKVQCMQVWP 171
           ++STA VA +NRA+PAQASMVAPFTGLKST+ FPT+RK+  DIT+IASNGG+VQCMQVWP
Sbjct: 5   MLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWP 64

Query: 170 PRGKKKFETLSYLPPLTKGELAKEVDYLLRNKWIPCLEFSVRGGFVYREHHRSPGY 3
           PRGKK +ETLSYLPPLT+ +LAKEV+YLLR  W+PCLEF +  G VYRE+HRSPGY
Sbjct: 65  PRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGY 120


>gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Aralia elata]
          Length = 183

 Score =  182 bits (462), Expect = 2e-44
 Identities = 86/115 (74%), Positives = 100/115 (86%)
 Frame = -3

Query: 347 VMSTAVVASVNRATPAQASMVAPFTGLKSTATFPTSRKSADITTIASNGGKVQCMQVWPP 168
           V+S+A VA+V+RA PAQASMVAPFTGLKSTA FP +RK  DIT++ SNGG+VQCM+VWPP
Sbjct: 5   VISSASVAAVSRAAPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVWPP 64

Query: 167 RGKKKFETLSYLPPLTKGELAKEVDYLLRNKWIPCLEFSVRGGFVYREHHRSPGY 3
            G KKFETLSYLPPLT  ELAKEVDYLLR+ W+PCLEF +  G+VYRE+HRSPGY
Sbjct: 65  LGLKKFETLSYLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSPGY 119


>ref|XP_002532149.1| Ribulose bisphosphate carboxylase small chain, chloroplast
           precursor, putative [Ricinus communis]
           gi|223528159|gb|EEF30223.1| Ribulose bisphosphate
           carboxylase small chain, chloroplast precursor, putative
           [Ricinus communis]
          Length = 185

 Score =  181 bits (460), Expect = 4e-44
 Identities = 86/116 (74%), Positives = 102/116 (87%), Gaps = 1/116 (0%)
 Frame = -3

Query: 347 VMSTAVVASVNRATPAQASMVAPFTGLKSTATFPTSRKS-ADITTIASNGGKVQCMQVWP 171
           ++STA VAS+NRA+PAQASMVAPFTGLKST+ FP +RK+  DITT+A+NGG+VQCMQVWP
Sbjct: 5   MLSTATVASLNRASPAQASMVAPFTGLKSTSAFPVTRKTNTDITTLANNGGRVQCMQVWP 64

Query: 170 PRGKKKFETLSYLPPLTKGELAKEVDYLLRNKWIPCLEFSVRGGFVYREHHRSPGY 3
           P GKKKFETLSYLP LT+ +LAKEV+YLLR  W+PCLEF +  GFVYRE+ RSPGY
Sbjct: 65  PLGKKKFETLSYLPDLTREQLAKEVEYLLRKGWVPCLEFELEHGFVYRENARSPGY 120


>dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Panax ginseng]
          Length = 183

 Score =  181 bits (458), Expect = 7e-44
 Identities = 84/115 (73%), Positives = 99/115 (86%)
 Frame = -3

Query: 347 VMSTAVVASVNRATPAQASMVAPFTGLKSTATFPTSRKSADITTIASNGGKVQCMQVWPP 168
           V+S+A VA+V+RA PAQASMVAPFTGLKSTA FP +RK  DIT++ SNGG+VQCM+VWPP
Sbjct: 5   VISSATVAAVSRAVPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVWPP 64

Query: 167 RGKKKFETLSYLPPLTKGELAKEVDYLLRNKWIPCLEFSVRGGFVYREHHRSPGY 3
            G KKFETLSYLP LT+ +L+KEVDYLLR+ W+PCLEF +  GFVYREHH SPGY
Sbjct: 65  LGLKKFETLSYLPQLTQEQLSKEVDYLLRSGWVPCLEFELEHGFVYREHHHSPGY 119