BLASTX nr result

ID: Coptis25_contig00031878 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031878
         (446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29933.3| unnamed protein product [Vitis vinifera]               85   5e-15
ref|XP_002276958.1| PREDICTED: uncharacterized protein LOC100262...    85   5e-15
emb|CAN71660.1| hypothetical protein VITISV_016185 [Vitis vinifera]    85   5e-15
ref|XP_002319697.1| predicted protein [Populus trichocarpa] gi|2...    84   1e-14
ref|XP_002325413.1| predicted protein [Populus trichocarpa] gi|2...    80   1e-13

>emb|CBI29933.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 60/159 (37%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
 Frame = +3

Query: 3    TPSPQRRSSQINIDNVKIFTTPRKLLHSLQDLDDENSDYFEEQARRIISPCSSKSEWSPT 182
            TPSPQR  SQIN+DNV I+TTPRKL+HSLQD     S++ E+Q RR+ SP  SK EWSP+
Sbjct: 550  TPSPQRLRSQINVDNVNIYTTPRKLVHSLQD-----SNFSEKQNRRLRSPSPSKYEWSPS 604

Query: 183  SPLDGDGHSHNSK----DNGNRSYSELGXXXXXXXXXXXXXXXXXXXXXPDASLEI---G 341
                  G SH+      +NGN S    G                        S E+    
Sbjct: 605  VNYGQSGFSHDMNYEVGENGNLSSGGGGDQSQGDSESVSSTEDVPTEANVQVSHEVIPGD 664

Query: 342  SNEKSGIQSSNTPPMVSWKKV-----LKWVFGLLFILLA 443
            + +  G+       MV  KK       K V+GL+F+L A
Sbjct: 665  TIDTQGVGMVGMVGMVGMKKAGEKISFKLVYGLIFLLFA 703


>ref|XP_002276958.1| PREDICTED: uncharacterized protein LOC100262437 [Vitis vinifera]
          Length = 615

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 60/159 (37%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
 Frame = +3

Query: 3   TPSPQRRSSQINIDNVKIFTTPRKLLHSLQDLDDENSDYFEEQARRIISPCSSKSEWSPT 182
           TPSPQR  SQIN+DNV I+TTPRKL+HSLQD     S++ E+Q RR+ SP  SK EWSP+
Sbjct: 442 TPSPQRLRSQINVDNVNIYTTPRKLVHSLQD-----SNFSEKQNRRLRSPSPSKYEWSPS 496

Query: 183 SPLDGDGHSHNSK----DNGNRSYSELGXXXXXXXXXXXXXXXXXXXXXPDASLEI---G 341
                 G SH+      +NGN S    G                        S E+    
Sbjct: 497 VNYGQSGFSHDMNYEVGENGNLSSGGGGDQSQGDSESVSSTEDVPTEANVQVSHEVIPGD 556

Query: 342 SNEKSGIQSSNTPPMVSWKKV-----LKWVFGLLFILLA 443
           + +  G+       MV  KK       K V+GL+F+L A
Sbjct: 557 TIDTQGVGMVGMVGMVGMKKAGEKISFKLVYGLIFLLFA 595


>emb|CAN71660.1| hypothetical protein VITISV_016185 [Vitis vinifera]
          Length = 615

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 60/159 (37%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
 Frame = +3

Query: 3   TPSPQRRSSQINIDNVKIFTTPRKLLHSLQDLDDENSDYFEEQARRIISPCSSKSEWSPT 182
           TPSPQR  SQIN+DNV I+TTPRKL+HSLQD     S++ E+Q RR+ SP  SK EWSP+
Sbjct: 442 TPSPQRLRSQINVDNVNIYTTPRKLVHSLQD-----SNFSEKQNRRLRSPSPSKYEWSPS 496

Query: 183 SPLDGDGHSHNSK----DNGNRSYSELGXXXXXXXXXXXXXXXXXXXXXPDASLEI---G 341
                 G SH+      +NGN S    G                        S E+    
Sbjct: 497 VNYGQSGFSHDMNYEVGENGNLSSGGGGDQSQGDSESVSSTEDVPTEANVQVSHEVIPGD 556

Query: 342 SNEKSGIQSSNTPPMVSWKKV-----LKWVFGLLFILLA 443
           + +  G+       MV  KK       K V+GL+F+L A
Sbjct: 557 TIDTQGVGMVGMVGMVGMKKAGENISFKLVYGLIFLLFA 595


>ref|XP_002319697.1| predicted protein [Populus trichocarpa] gi|222858073|gb|EEE95620.1|
           predicted protein [Populus trichocarpa]
          Length = 609

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = +3

Query: 3   TPSPQRRSSQINIDNVKIFTTPRKLLHSLQDLDDENSDYFEEQARRIISPCSSKSEWSPT 182
           TPSPQR  S IN+DN+ IFTTPRKL+ +LQD +D +SD+ E+Q  R  SPC SK ++SPT
Sbjct: 442 TPSPQRSRSHINVDNISIFTTPRKLVRALQDPNDLDSDFSEKQNGRFESPCPSKFDYSPT 501

Query: 183 SPLDGDGHSHN---SKDNGNRSYS 245
             L  +G  H+     D   +SY+
Sbjct: 502 PRLKRNGFQHDVGLEVDENGKSYT 525


>ref|XP_002325413.1| predicted protein [Populus trichocarpa] gi|222862288|gb|EEE99794.1|
           predicted protein [Populus trichocarpa]
          Length = 609

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
 Frame = +3

Query: 3   TPSPQRRSSQINIDNVKIFTTPRKLLHSLQDLDDENSDYFEEQARRIISPCSSKSEWSPT 182
           TPSPQR  S IN++NV IFTTPRKL+H+LQD +D +SD+ E+Q  R  SPCS K ++ PT
Sbjct: 441 TPSPQRSRSHINVNNVSIFTTPRKLVHALQDPNDLDSDFSEKQNERFGSPCSCKFDYRPT 500

Query: 183 SPLDGDGHSHNS----KDNGN 233
             L  +G   +      +NGN
Sbjct: 501 LRLKQNGFQQDMGSEVNENGN 521


Top