BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031803
         (424 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    84   9e-15
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    82   6e-14
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    79   3e-13
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    79   4e-13
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...    79   5e-13

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 48/137 (35%), Positives = 72/137 (52%)
 Frame = -2

Query: 423  NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIIGMQP 244
            +D+++F  G   SI     I ++F+  +               ++ +  T ++Q    + 
Sbjct: 852  DDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFEL 911

Query: 243  ISPPIKYLGLPLVFARISTKDCLPLVEKTSTKIENWKNRFLGHAERLQLIISVLATFHIY 64
             + P+KYLGLPL+  R++  D LPLVEK   +I +W NRFL  A RLQLI SVL++   +
Sbjct: 912  GTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNF 971

Query: 63   WAKTFILPKGVLTMISK 13
            W   F LPK  L  I K
Sbjct: 972  WLSVFRLPKACLQEIEK 988


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 41/137 (29%), Positives = 73/137 (53%)
 Frame = -2

Query: 423  NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIIGMQP 244
            +D+++F  G   S+  +  I  +F+  +               ++ +    ++       
Sbjct: 960  DDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDS 1019

Query: 243  ISPPIKYLGLPLVFARISTKDCLPLVEKTSTKIENWKNRFLGHAERLQLIISVLATFHIY 64
             S P++YLGLPL+  R++  DCLPL+EK  ++I +WKNRFL +A RLQL+ SV+++   +
Sbjct: 1020 GSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKF 1079

Query: 63   WAKTFILPKGVLTMISK 13
            W   F LP+  +  I +
Sbjct: 1080 WISAFRLPRACIREIEQ 1096


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 41/141 (29%), Positives = 71/141 (50%)
 Frame = -2

Query: 423  NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIIGMQP 244
            +D+L+F R    SI  +    + FS+A+               +  +++  L   I M  
Sbjct: 693  DDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPI 752

Query: 243  ISPPIKYLGLPLVFARISTKDCLPLVEKTSTKIENWKNRFLGHAERLQLIISVLATFHIY 64
             S P +YLG+PL   +++   C PL++K +T+ + W    L +A RLQL+ ++L +   Y
Sbjct: 753  GSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNY 812

Query: 63   WAKTFILPKGVLTMISKTCVK 1
            W + F LPK ++  +  TC K
Sbjct: 813  WGQIFPLPKKLIKAVETTCRK 833


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 46/139 (33%), Positives = 68/139 (48%)
 Frame = -2

Query: 423  NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIIGMQP 244
            +D++I   G+  SI  +  +L EF++ +               +       +VQ      
Sbjct: 593  DDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDV 652

Query: 243  ISPPIKYLGLPLVFARISTKDCLPLVEKTSTKIENWKNRFLGHAERLQLIISVLATFHIY 64
               P++YLGLPLV  R++  DCLPL+E+   KIE W +RFL  A RL LI S L +   +
Sbjct: 653  GKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNF 712

Query: 63   WAKTFILPKGVLTMISKTC 7
            W   F LP+  +  I K C
Sbjct: 713  WMAAFRLPRACIREIDKLC 731


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 42/141 (29%), Positives = 69/141 (48%)
 Frame = -2

Query: 423  NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXLTQDDSTHLVQIIGMQP 244
            +D+L+F R  + S+  +     +FS A+               +  + +  L   + MQ 
Sbjct: 690  DDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQL 749

Query: 243  ISPPIKYLGLPLVFARISTKDCLPLVEKTSTKIENWKNRFLGHAERLQLIISVLATFHIY 64
               P +YLG+PL   +++   C PLVE  + + + W  + L +A RLQLI S+L++   Y
Sbjct: 750  GELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNY 809

Query: 63   WAKTFILPKGVLTMISKTCVK 1
            WA  F L K V+  + K C K
Sbjct: 810  WAHIFPLSKKVIQAVEKVCRK 830