BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031796
         (515 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85091.1| ribulose 1,5-bisphosphate carboxylase small subun...   269   2e-70
dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   261   5e-68
gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subun...   256   1e-66
ref|XP_002532149.1| Ribulose bisphosphate carboxylase small chai...   253   1e-65
sp|P24007.1|RBS_PYRPY RecName: Full=Ribulose bisphosphate carbox...   252   2e-65

>gb|ADB85091.1| ribulose 1,5-bisphosphate carboxylase small subunit [Jatropha
           curcas]
          Length = 181

 Score =  269 bits (687), Expect = 2e-70
 Identities = 126/149 (84%), Positives = 136/149 (91%)
 Frame = +1

Query: 67  MVAPFTGLKSAAAFPATRKSADITSIASNGGRVSCMKVWPTEGVKKFETLSYLPPLTREQ 246
           MVAPFTGLKS A FPA + + DITSIA NGGRV CMKVWPT+G+KKFETLSYLPPLTREQ
Sbjct: 24  MVAPFTGLKSTAGFPARKTTNDITSIAGNGGRVQCMKVWPTQGLKKFETLSYLPPLTREQ 83

Query: 247 LLKEVEYLLRSNLIPCLEFELKDGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVVN 426
           L KEVEYLLRS  +PCLEFEL+ GFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQV+N
Sbjct: 84  LAKEVEYLLRSGWVPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVLN 143

Query: 427 ELDEAIKAYPNGFIRIIGFDNVRQVQVIS 513
           ELDEAIKA+PNGF+RIIGFD+ RQVQ IS
Sbjct: 144 ELDEAIKAHPNGFVRIIGFDSYRQVQCIS 172


>dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Eucalyptus globulus]
          Length = 181

 Score =  261 bits (666), Expect = 5e-68
 Identities = 121/149 (81%), Positives = 134/149 (89%)
 Frame = +1

Query: 67  MVAPFTGLKSAAAFPATRKSADITSIASNGGRVSCMKVWPTEGVKKFETLSYLPPLTREQ 246
           MVAPFTGLKSA+AFP TRKSADITS+ASNGGRV CM+VWP  G KKFETLSYLPPL+RE+
Sbjct: 24  MVAPFTGLKSASAFPVTRKSADITSLASNGGRVQCMQVWPPIGKKKFETLSYLPPLSREE 83

Query: 247 LLKEVEYLLRSNLIPCLEFELKDGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVVN 426
           LLKE+EYLLR N +PCLEFEL+ GFVYR+N++SPGYYDGRYWTMWKLPMFGCTD +QV  
Sbjct: 84  LLKEIEYLLRMNWVPCLEFELEKGFVYRDNHKSPGYYDGRYWTMWKLPMFGCTDPLQVFK 143

Query: 427 ELDEAIKAYPNGFIRIIGFDNVRQVQVIS 513
           ELDEAIK YPN F+RIIGFDN RQVQ IS
Sbjct: 144 ELDEAIKTYPNAFVRIIGFDNKRQVQCIS 172


>gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subunit [Malus x
           domestica x Pyrus communis]
          Length = 179

 Score =  256 bits (654), Expect = 1e-66
 Identities = 121/149 (81%), Positives = 132/149 (88%)
 Frame = +1

Query: 67  MVAPFTGLKSAAAFPATRKSADITSIASNGGRVSCMKVWPTEGVKKFETLSYLPPLTREQ 246
           MVAPFTGLKS++AFP TRKS DITSIASNGGRV CM+VWP  G+KKFETLSYLPPL+ E 
Sbjct: 22  MVAPFTGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTES 81

Query: 247 LLKEVEYLLRSNLIPCLEFELKDGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVVN 426
           L KEV+YLLR N +PCLEFEL+ GFVYRENNRSPGYYDGRYWTMWKLPMFGCTD+ QV+ 
Sbjct: 82  LAKEVDYLLRKNWVPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDSSQVLK 141

Query: 427 ELDEAIKAYPNGFIRIIGFDNVRQVQVIS 513
           EL+EA KAYP  FIRIIGFDNVRQVQ IS
Sbjct: 142 ELEEAKKAYPQSFIRIIGFDNVRQVQCIS 170


>ref|XP_002532149.1| Ribulose bisphosphate carboxylase small chain, chloroplast
           precursor, putative [Ricinus communis]
           gi|223528159|gb|EEF30223.1| Ribulose bisphosphate
           carboxylase small chain, chloroplast precursor, putative
           [Ricinus communis]
          Length = 185

 Score =  253 bits (646), Expect = 1e-65
 Identities = 121/150 (80%), Positives = 132/150 (88%), Gaps = 1/150 (0%)
 Frame = +1

Query: 67  MVAPFTGLKSAAAFPATRKS-ADITSIASNGGRVSCMKVWPTEGVKKFETLSYLPPLTRE 243
           MVAPFTGLKS +AFP TRK+  DIT++A+NGGRV CM+VWP  G KKFETLSYLP LTRE
Sbjct: 24  MVAPFTGLKSTSAFPVTRKTNTDITTLANNGGRVQCMQVWPPLGKKKFETLSYLPDLTRE 83

Query: 244 QLLKEVEYLLRSNLIPCLEFELKDGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVV 423
           QL KEVEYLLR   +PCLEFEL+ GFVYREN RSPGYYDGRYWTMWKLPMFGC+DAVQV+
Sbjct: 84  QLAKEVEYLLRKGWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCSDAVQVL 143

Query: 424 NELDEAIKAYPNGFIRIIGFDNVRQVQVIS 513
            ELDEAIKAYPN F+RIIGFDNVRQVQ IS
Sbjct: 144 KELDEAIKAYPNSFVRIIGFDNVRQVQCIS 173


>sp|P24007.1|RBS_PYRPY RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|218021|dbj|BAA00450.1| RuBisCO small
           subunit [Pyrus pyrifolia var. culta]
          Length = 183

 Score =  252 bits (644), Expect = 2e-65
 Identities = 119/149 (79%), Positives = 131/149 (87%)
 Frame = +1

Query: 67  MVAPFTGLKSAAAFPATRKSADITSIASNGGRVSCMKVWPTEGVKKFETLSYLPPLTREQ 246
           MVAPF GLKS++AFP TRKS DITSIASNGGRV CM+VWP  G+KKFETLSYLPPL+ E 
Sbjct: 26  MVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSES 85

Query: 247 LLKEVEYLLRSNLIPCLEFELKDGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVVN 426
           L KEV+YLLR N +PCLEFEL+ GFVYREN+RSPGYYDGRYWTMWKLPMFGCTD+ QV+ 
Sbjct: 86  LAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLK 145

Query: 427 ELDEAIKAYPNGFIRIIGFDNVRQVQVIS 513
           EL+EA KAYP  FIRIIGFDNVRQVQ IS
Sbjct: 146 ELEEAKKAYPQSFIRIIGFDNVRQVQCIS 174