BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031779
         (469 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEJ72555.1| putative retroelement polyprotein [Malus x domest...   137   9e-31
emb|CAN83125.1| hypothetical protein VITISV_015109 [Vitis vinifera]   125   5e-27
gb|ADK92880.1| retrotransposon 4 protein [Hypericum perforatum]       124   6e-27
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi...   122   4e-26
emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|72697...   118   6e-25

>gb|AEJ72555.1| putative retroelement polyprotein [Malus x domestica]
          Length = 1249

 Score =  137 bits (345), Expect = 9e-31
 Identities = 70/142 (49%), Positives = 93/142 (65%), Gaps = 3/142 (2%)
 Frame = -2

Query: 417 KDRKSKMTIGEGIYSNGLYLLKSHK---KACQTSDLLESRILHKRLGHPSSHVLSNLFPH 247
           +DR +K  IGEG+Y +GLY+L       +  Q   L    + H+RL HPS+ V S+LF  
Sbjct: 402 QDRITKKKIGEGMYKDGLYMLSLQPVEARGLQVGFLKNHLLWHRRLRHPSNLVQSHLFKT 461

Query: 246 VSLNSDDVCDVCQFSKQTRLSFPNSNYVSNKLFELIHSNLWGPAPINSYDGYKYFVLFID 67
                   C+VC FSKQTRL F  S+  S K FE++HS++WGPAP+ S+DG++YFV F+D
Sbjct: 462 SENVMTQDCEVCHFSKQTRLPFDVSSTKSCKPFEIVHSDVWGPAPLVSFDGFRYFVTFVD 521

Query: 66  DKSRATWLYLLKLKTEVVTVFK 1
           D SR TWLYLLK K EV+ VF+
Sbjct: 522 DFSRCTWLYLLKSKDEVINVFQ 543


>emb|CAN83125.1| hypothetical protein VITISV_015109 [Vitis vinifera]
          Length = 1355

 Score =  125 bits (313), Expect = 5e-27
 Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 5/144 (3%)
 Frame = -2

Query: 417 KDRKSKMTIGEGIYSNGLYLLKSHKKACQT-----SDLLESRILHKRLGHPSSHVLSNLF 253
           +DR +K TIGEG   +GL+   S  + C+      S   +  + H+RLGHPS  V + + 
Sbjct: 457 QDRITKKTIGEGFQLHGLFYFSSDDRLCKGFQASFSSTNKHSLWHQRLGHPSESVFNKIH 516

Query: 252 PHVSLNSDDVCDVCQFSKQTRLSFPNSNYVSNKLFELIHSNLWGPAPINSYDGYKYFVLF 73
           P +   +D  CD+C +SK TRL F  S   S+++FEL+HS++WGP  + S DG+KYFV F
Sbjct: 517 PSLPKGTDG-CDICHYSKSTRLPFNLSLSKSSEMFELVHSDVWGPFSL-SIDGFKYFVTF 574

Query: 72  IDDKSRATWLYLLKLKTEVVTVFK 1
           IDD S+ TW+YLLK K+EV   FK
Sbjct: 575 IDDFSKVTWVYLLKSKSEVFECFK 598


>gb|ADK92880.1| retrotransposon 4 protein [Hypericum perforatum]
          Length = 1347

 Score =  124 bits (312), Expect = 6e-27
 Identities = 69/142 (48%), Positives = 92/142 (64%), Gaps = 1/142 (0%)
 Frame = -2

Query: 423 ENKDRKSKMTIGEGIYSNGLYLLKSHKKACQT-SDLLESRILHKRLGHPSSHVLSNLFPH 247
           E +D  ++  IGEG   NGLY+L+    A    S+L  S + H RLGHPS  VL  LFP 
Sbjct: 381 EFQDCLTRTKIGEGSLKNGLYVLEQCSNALAAHSELSSSDLWHLRLGHPSHSVLLQLFPK 440

Query: 246 VSLNSDDVCDVCQFSKQTRLSFPNSNYVSNKLFELIHSNLWGPAPINSYDGYKYFVLFID 67
           ++ +S  VCD C+ +K  R SF  S+ V N+ F+L+HS++W  AP +SYD + YFV FID
Sbjct: 441 IT-SSKVVCDSCELAKNYRSSFVCSDSVYNECFQLVHSDVWS-APKSSYDSFSYFVTFID 498

Query: 66  DKSRATWLYLLKLKTEVVTVFK 1
             SR+TW+YLLK K EV +VFK
Sbjct: 499 HHSRSTWIYLLKHKHEVFSVFK 520


>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1461

 Score =  122 bits (305), Expect = 4e-26
 Identities = 58/143 (40%), Positives = 87/143 (60%), Gaps = 5/143 (3%)
 Frame = -2

Query: 417 KDRKSKMTIGEGIYSNGLYLLKSHKKACQTSDLLESRILHKRLGHPSSHVLSNLFPHVSL 238
           +D    +T+GEG     LY+L +   A   + +++  + HKRLGHPS   L +L   +  
Sbjct: 531 QDLTKGLTLGEGKRIGNLYVLDTQSPAISVNAVVDVSVWHKRLGHPSFSRLDSLSEVLGT 590

Query: 237 N-----SDDVCDVCQFSKQTRLSFPNSNYVSNKLFELIHSNLWGPAPINSYDGYKYFVLF 73
                     C VC  +KQ +LSFP++N + N  FEL+H ++WGP  + + +GYKYF+  
Sbjct: 591 TRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTI 650

Query: 72  IDDKSRATWLYLLKLKTEVVTVF 4
           +DD SRATW+YLLK K++V+TVF
Sbjct: 651 VDDHSRATWIYLLKSKSDVLTVF 673


>emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|7269745|emb|CAB81478.1|
           putative protein [Arabidopsis thaliana]
          Length = 1415

 Score =  118 bits (295), Expect = 6e-25
 Identities = 60/145 (41%), Positives = 90/145 (62%), Gaps = 7/145 (4%)
 Frame = -2

Query: 417 KDRKSKMTIGEGIYSNGLYLLKSHK-KACQTS--DLLESRILHKRLGHPSSHVLSNLFPH 247
           KD+ +K  + +G   N LYLL++ K  AC +S        + H RLGHP+  VL  L  +
Sbjct: 386 KDKLTKQLLTKGTRHNDLYLLENPKFMACYSSRQQATSDEVWHMRLGHPNQDVLQQLLRN 445

Query: 246 ----VSLNSDDVCDVCQFSKQTRLSFPNSNYVSNKLFELIHSNLWGPAPINSYDGYKYFV 79
               +S  S  +CD CQ  K  +L F +S++VS++L E +H +LWGPAP+ S  G++Y+V
Sbjct: 446 KAIVISKTSHSLCDACQMGKICKLPFASSDFVSSRLLERVHCDLWGPAPVVSSQGFRYYV 505

Query: 78  LFIDDKSRATWLYLLKLKTEVVTVF 4
           +FID+ SR TW Y L+LK++  +VF
Sbjct: 506 IFIDNYSRFTWFYPLRLKSDFFSVF 530