BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031716
         (423 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003604235.1| Pentatricopeptide repeat-containing protein ...   134   1e-29
ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containi...   133   1e-29
ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containi...   133   1e-29
ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containi...   128   6e-28
ref|XP_002528030.1| pentatricopeptide repeat-containing protein,...   127   1e-27

>ref|XP_003604235.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355505290|gb|AES86432.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 688

 Score =  134 bits (336), Expect = 1e-29
 Identities = 69/114 (60%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = +3

Query: 84  PSSKIQTKPPPNSKRPIF-IKKKQTSKFPSKTQKFSQKDAFPQSLPLHKKNPSSIYKDIQ 260
           PSS  +T      K+P F I  K  +K  +  + FS++DAFP SLPLH KNP SIYKDI+
Sbjct: 27  PSSSFKTTH--QRKKPKFTIPNKNNNKNNNVKKPFSEEDAFPCSLPLHNKNPISIYKDIK 84

Query: 261 NFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIR 422
           NFAR+NKL EAL ILDY+++ GIPVN TTFSSL+ AC+RT SL  GKQ+HTHIR
Sbjct: 85  NFARQNKLNEALAILDYVDQNGIPVNATTFSSLIAACIRTNSLSIGKQIHTHIR 138


>ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Cucumis sativus]
          Length = 716

 Score =  133 bits (335), Expect = 1e-29
 Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
 Frame = +3

Query: 93  KIQTKPPPNSKRPIFIKKKQTSKFPS-KTQKFSQKDAFPQSLPLHKKNPSSIYKDIQNFA 269
           K  T  PP+       K K  SKF + K   F++KDAFP SLPLH KNP +IY+D+Q FA
Sbjct: 38  KSTTDTPPS-------KIKIVSKFRNRKRPTFAEKDAFPSSLPLHTKNPHAIYEDVQRFA 90

Query: 270 RENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIR 422
           R+NKLKEALTI+DY++++GIPVN TTFSSL+ ACVRTKS+ Y KQ+H HIR
Sbjct: 91  RQNKLKEALTIMDYVDQQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIR 141


>ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Cucumis sativus]
          Length = 696

 Score =  133 bits (335), Expect = 1e-29
 Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
 Frame = +3

Query: 93  KIQTKPPPNSKRPIFIKKKQTSKFPS-KTQKFSQKDAFPQSLPLHKKNPSSIYKDIQNFA 269
           K  T  PP+       K K  SKF + K   F++KDAFP SLPLH KNP +IY+D+Q FA
Sbjct: 38  KSTTDTPPS-------KIKIVSKFRNRKRPTFAEKDAFPSSLPLHTKNPHAIYEDVQRFA 90

Query: 270 RENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIR 422
           R+NKLKEALTI+DY++++GIPVN TTFSSL+ ACVRTKS+ Y KQ+H HIR
Sbjct: 91  RQNKLKEALTIMDYVDQQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIR 141


>ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Vitis vinifera]
          Length = 725

 Score =  128 bits (321), Expect = 6e-28
 Identities = 67/117 (57%), Positives = 81/117 (69%), Gaps = 13/117 (11%)
 Frame = +3

Query: 111 PPNSKRP--IFIKKKQTSKFPSKTQ-----------KFSQKDAFPQSLPLHKKNPSSIYK 251
           P  SK P  I+   + T   P++TQ            FS+KDAFP SLPLH KNP +I+ 
Sbjct: 62  PLQSKNPHAIYSDNQTTPSRPTQTQFRTRLKSPKKKPFSEKDAFPMSLPLHTKNPHAIFS 121

Query: 252 DIQNFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIR 422
           DIQ FAR+ KLKEALTILDY +++GIPVN TTFSSLL ACV +KSL +GKQ+H HIR
Sbjct: 122 DIQRFARQGKLKEALTILDYCDQQGIPVNPTTFSSLLRACVESKSLTHGKQIHVHIR 178


>ref|XP_002528030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532560|gb|EEF34348.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 456

 Score =  127 bits (319), Expect = 1e-27
 Identities = 56/84 (66%), Positives = 71/84 (84%)
 Frame = +3

Query: 171 KTQKFSQKDAFPQSLPLHKKNPSSIYKDIQNFARENKLKEALTILDYLEKEGIPVNTTTF 350
           +  +F +KDAFP SLPLH KNPS++YKDIQ F R+NKLKEAL I+DYLE++GIPVN TTF
Sbjct: 59  RKSRFREKDAFPSSLPLHTKNPSAVYKDIQRFTRQNKLKEALIIMDYLEQQGIPVNATTF 118

Query: 351 SSLLNACVRTKSLGYGKQVHTHIR 422
           S+L+ AC+R+KSL + KQ+H HIR
Sbjct: 119 SALIAACIRSKSLDHAKQIHAHIR 142