BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031664
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003527858.1| PREDICTED: KH domain-containing protein At4g...    61   1e-07
ref|XP_002323932.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_003608395.1| Poly(rC)-binding protein [Medicago truncatul...    60   2e-07
ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus ...    59   3e-07
ref|XP_003547100.1| PREDICTED: KH domain-containing protein At4g...    59   4e-07

>ref|XP_003527858.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
           max]
          Length = 676

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
 Frame = -3

Query: 184 NDNPSSTNKRRCRQ---------PNHVAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARI 32
           N  P+   KRR            P  V FRLLCH S+ G VIGK GSI+  I QETG ++
Sbjct: 8   NAGPNGRGKRRRSSGGFSSLGVSPGSVVFRLLCHASRIGGVIGKGGSIISQIRQETGVKL 67

Query: 31  QMDEVIHGC 5
           +++E + GC
Sbjct: 68  RIEEAVPGC 76


>ref|XP_002323932.1| predicted protein [Populus trichocarpa] gi|222866934|gb|EEF04065.1|
           predicted protein [Populus trichocarpa]
          Length = 722

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 11/64 (17%)
 Frame = -3

Query: 178 NPSSTNKRRCRQPN-----------HVAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARI 32
           N SS NKR   QP+           HV+FRLLCH S+ G VIGK+G+I+K ++Q+TGA++
Sbjct: 10  NGSSANKRSKPQPSASAAPLPVPSGHVSFRLLCHASRIGGVIGKAGNIIKGLQQQTGAKV 69

Query: 31  QMDE 20
           ++++
Sbjct: 70  RIED 73


>ref|XP_003608395.1| Poly(rC)-binding protein [Medicago truncatula]
           gi|355509450|gb|AES90592.1| Poly(rC)-binding protein
           [Medicago truncatula]
          Length = 616

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 27/48 (56%), Positives = 35/48 (72%)
 Frame = -3

Query: 148 RQPNHVAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDEVIHGC 5
           R   HV FRLLCH S+ GA IGKSGS++K ++Q TGARI++D+    C
Sbjct: 15  RNNGHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDC 62


>ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus communis]
           gi|223538165|gb|EEF39776.1| Poly(rC)-binding protein,
           putative [Ricinus communis]
          Length = 698

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 23/41 (56%), Positives = 36/41 (87%)
 Frame = -3

Query: 142 PNHVAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDE 20
           P HV+FRLLCH S+ G +IGKSG+I+K ++Q++GA+I+++E
Sbjct: 53  PGHVSFRLLCHASRIGGIIGKSGTIIKQLQQQSGAKIRIEE 93


>ref|XP_003547100.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
           max]
          Length = 710

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 24/41 (58%), Positives = 35/41 (85%)
 Frame = -3

Query: 142 PNHVAFRLLCHVSKSGAVIGKSGSIVKLIEQETGARIQMDE 20
           P HVAFRLLC+ S+ G VIGKSGS++K ++Q TGA+I++++
Sbjct: 42  PGHVAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIED 82