BLASTX nr result
ID: Coptis25_contig00031642
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00031642
(1008 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22109.3| unnamed protein product [Vitis vinifera] 308 2e-81
ref|XP_002279448.1| PREDICTED: pentatricopeptide repeat-containi... 308 2e-81
ref|XP_002533283.1| pentatricopeptide repeat-containing protein,... 292 8e-77
ref|XP_002313272.1| predicted protein [Populus trichocarpa] gi|2... 292 1e-76
ref|XP_002299968.1| predicted protein [Populus trichocarpa] gi|2... 291 2e-76
>emb|CBI22109.3| unnamed protein product [Vitis vinifera]
Length = 386
Score = 308 bits (788), Expect = 2e-81
Identities = 163/309 (52%), Positives = 216/309 (69%), Gaps = 1/309 (0%)
Frame = -2
Query: 1004 SYQLVVTQASTDDHKVTDGVLSGLIAEEENDPVFYKET-CTAYIERLCKSGNVADAAGLL 828
SYQ + T+AS D+ V D L+ ++++ E P F E CT YI++L K+GN + AA +
Sbjct: 62 SYQSLATEASPDEEVVPDEFLNEILSDIERSPKFSSEKLCTTYIDKLLKAGNPSAAARFM 121
Query: 827 QSLHNKHIFLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNFLNPLFYPTLTKAFLNS 648
QSLH+KHIFL P YNLLL E + LS+IFKD LVS L+ Y + K F +
Sbjct: 122 QSLHDKHIFLSPNAYNLLLVAASEANAIDFLSQIFKDLLVSNKPLSSTSYFNVAKVFTKT 181
Query: 647 TDSVPLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMIFDLMKGLNCKPDRVTY 468
DSV LLKFV EVSE+ P++ AFAE +QI+K+++IFD MK L CKPD +TY
Sbjct: 182 DDSV-LLKFVREVSELTFPRNATILNRIIHAFAECRQIEKSLIIFDHMKSLKCKPDLITY 240
Query: 467 NIVMDILGRAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMRE 288
N V+ LGRAG +D+MLH F+SMK +++ PDIISYNTL+NS +K+GRLDLC+VF +EM E
Sbjct: 241 NTVLGFLGRAGRLDEMLHEFSSMKVANIAPDIISYNTLLNSLQKVGRLDLCLVFFREMGE 300
Query: 287 NRVDPDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHIYRSLISNSKKAEKLDL 108
N + PDLRTY A+I+ FG+ G+++EAL F +MK+ I PSI+IYRSLI+ SKK K++L
Sbjct: 301 NGLKPDLRTYRALIEGFGQSGNLEEALRLFSEMKQGQICPSIYIYRSLINYSKKMGKVEL 360
Query: 107 ATSLLEEMN 81
A SL EEMN
Sbjct: 361 AMSLSEEMN 369
>ref|XP_002279448.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11900-like
[Vitis vinifera]
Length = 357
Score = 308 bits (788), Expect = 2e-81
Identities = 163/309 (52%), Positives = 216/309 (69%), Gaps = 1/309 (0%)
Frame = -2
Query: 1004 SYQLVVTQASTDDHKVTDGVLSGLIAEEENDPVFYKET-CTAYIERLCKSGNVADAAGLL 828
SYQ + T+AS D+ V D L+ ++++ E P F E CT YI++L K+GN + AA +
Sbjct: 33 SYQSLATEASPDEEVVPDEFLNEILSDIERSPKFSSEKLCTTYIDKLLKAGNPSAAARFM 92
Query: 827 QSLHNKHIFLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNFLNPLFYPTLTKAFLNS 648
QSLH+KHIFL P YNLLL E + LS+IFKD LVS L+ Y + K F +
Sbjct: 93 QSLHDKHIFLSPNAYNLLLVAASEANAIDFLSQIFKDLLVSNKPLSSTSYFNVAKVFTKT 152
Query: 647 TDSVPLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMIFDLMKGLNCKPDRVTY 468
DSV LLKFV EVSE+ P++ AFAE +QI+K+++IFD MK L CKPD +TY
Sbjct: 153 DDSV-LLKFVREVSELTFPRNATILNRIIHAFAECRQIEKSLIIFDHMKSLKCKPDLITY 211
Query: 467 NIVMDILGRAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMRE 288
N V+ LGRAG +D+MLH F+SMK +++ PDIISYNTL+NS +K+GRLDLC+VF +EM E
Sbjct: 212 NTVLGFLGRAGRLDEMLHEFSSMKVANIAPDIISYNTLLNSLQKVGRLDLCLVFFREMGE 271
Query: 287 NRVDPDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHIYRSLISNSKKAEKLDL 108
N + PDLRTY A+I+ FG+ G+++EAL F +MK+ I PSI+IYRSLI+ SKK K++L
Sbjct: 272 NGLKPDLRTYRALIEGFGQSGNLEEALRLFSEMKQGQICPSIYIYRSLINYSKKMGKVEL 331
Query: 107 ATSLLEEMN 81
A SL EEMN
Sbjct: 332 AMSLSEEMN 340
>ref|XP_002533283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223526886|gb|EEF29094.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 405
Score = 292 bits (748), Expect = 8e-77
Identities = 146/306 (47%), Positives = 211/306 (68%)
Frame = -2
Query: 983 QASTDDHKVTDGVLSGLIAEEENDPVFYKETCTAYIERLCKSGNVADAAGLLQSLHNKHI 804
+AS ++ +V + L+ ++A +N P +E CT Y+ +LC SG++ A LLQSL N++I
Sbjct: 88 KASLNEDEVAEAYLNIILAAIQNAPSSIEEICTGYLHKLCNSGSLFVAVRLLQSLQNRNI 147
Query: 803 FLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNFLNPLFYPTLTKAFLNSTDSVPLLK 624
LGP YNL++ E +++S++FKD ++SC L + L + F+N+ D V L+K
Sbjct: 148 TLGPNAYNLVMEAAGEANKADIVSRVFKDLMMSCKSLPSSSFINLARGFINTNDHVLLMK 207
Query: 623 FVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMIFDLMKGLNCKPDRVTYNIVMDILG 444
FV EV E+ P+S AFAE +Q DKA++IFD +K L KPD +TYN+V+ ILG
Sbjct: 208 FVKEVLELAFPRSMVVINRIIFAFAECRQFDKALLIFDQIKDLEYKPDLITYNMVLHILG 267
Query: 443 RAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMRENRVDPDLR 264
RAG +D+ML+ F+SMKE+ ++PD I YNTL+N +K GRLDLC+V+++EM E+ ++ DL
Sbjct: 268 RAGRVDEMLYEFSSMKEAGIVPDFICYNTLLNQLQKAGRLDLCLVYIREMGESGIEADLL 327
Query: 263 TYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHIYRSLISNSKKAEKLDLATSLLEEM 84
TYTA+I SFG+ GHI+E+L F MK R I PSI+IYRSLI+ +KK K++LA +LLEEM
Sbjct: 328 TYTALIQSFGKSGHIEESLRLFDDMKTRQIRPSIYIYRSLINTAKKMGKVELAMTLLEEM 387
Query: 83 NFSVLN 66
N S N
Sbjct: 388 NASPPN 393
>ref|XP_002313272.1| predicted protein [Populus trichocarpa] gi|222849680|gb|EEE87227.1|
predicted protein [Populus trichocarpa]
Length = 382
Score = 292 bits (747), Expect = 1e-76
Identities = 156/324 (48%), Positives = 213/324 (65%), Gaps = 1/324 (0%)
Frame = -2
Query: 1001 YQLVVTQASTDDHKVTDGVLSGLIAEEENDP-VFYKETCTAYIERLCKSGNVADAAGLLQ 825
Y+ + T+AS D ++ D L+ ++ EN P ++ TAY+ LCK+G + A LL+
Sbjct: 58 YKQLTTRASFDGEEIKDDNLNQMLEAVENAPECTTRKVGTAYVHNLCKAGTLFAAVRLLR 117
Query: 824 SLHNKHIFLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNFLNPLFYPTLTKAFLNST 645
L +K+IFLGP YN++L E D E+LS++FKD ++S L Y L + F+ S
Sbjct: 118 LLRDKNIFLGPSAYNIILVTASEKNDVEILSQVFKDLILSFQSLPSSLYLKLARGFVKSN 177
Query: 644 DSVPLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMIFDLMKGLNCKPDRVTYN 465
D V LL+ V EVSE+ P ST AFAE Q DKAI+IF+ M+ L CKPD VTYN
Sbjct: 178 DDVQLLRLVKEVSELTFPSSTKVVNRFIFAFAECGQFDKAILIFEQMENLKCKPDLVTYN 237
Query: 464 IVMDILGRAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMREN 285
V+D+LGRAG ID+ML FASMKE+ ++PD ISYNTL+N K+GRLDLC V+ ++M N
Sbjct: 238 TVLDLLGRAGRIDEMLGEFASMKEAGILPDFISYNTLLNQLTKVGRLDLCSVYFRDMVGN 297
Query: 284 RVDPDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHIYRSLISNSKKAEKLDLA 105
++PDL TYTA+I SFG+ G+I+E+L F +MK + I PSI+IYRSLI++ KK K++LA
Sbjct: 298 GIEPDLLTYTALIWSFGQSGNIEESLRLFNEMKTKQIRPSIYIYRSLIASLKKMGKIELA 357
Query: 104 TSLLEEMNFSVLNY*SL*CFKEEH 33
+ LEEMN S+ N FK H
Sbjct: 358 MTFLEEMNASMSNLAGPKDFKRTH 381
>ref|XP_002299968.1| predicted protein [Populus trichocarpa] gi|222847226|gb|EEE84773.1|
predicted protein [Populus trichocarpa]
Length = 352
Score = 291 bits (744), Expect = 2e-76
Identities = 155/310 (50%), Positives = 209/310 (67%), Gaps = 1/310 (0%)
Frame = -2
Query: 992 VVTQASTDDHKVTDGVLSGLIAEEENDPVFY-KETCTAYIERLCKSGNVADAAGLLQSLH 816
+ T+ S D+ +V D L+ +I EN P ++ TAY+ LCK+GN+ A LLQSL
Sbjct: 31 LTTRVSFDEGEVKDDNLNQMINAVENAPESATRKIGTAYVHNLCKAGNLFTAVRLLQSLC 90
Query: 815 NKHIFLGPRTYNLLLTVVREGKDFELLSKIFKDALVSCNFLNPLFYPTLTKAFLNSTDSV 636
+K+IFLGP YN++L E D +LS++FKD +VSC L Y L + F+ + D V
Sbjct: 91 DKNIFLGPSAYNIILVAASEKNDIAILSQVFKDLIVSCQSLPSTSYLKLARGFVKTNDDV 150
Query: 635 PLLKFVGEVSEMKCPKSTXXXXXXXIAFAESKQIDKAIMIFDLMKGLNCKPDRVTYNIVM 456
LL+ V EVSEM P S AFAE Q DKA++IF M+ L CKPD VTYN V+
Sbjct: 151 QLLRLVKEVSEMTFPSSMMVVNRIIFAFAECGQFDKALLIFKQMENLKCKPDLVTYNTVL 210
Query: 455 DILGRAGWIDKMLHAFASMKESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMRENRVD 276
D+LG AG ID+ML FASMKE+ ++PD ISYNTL+N K+GRLDLC V+ ++M E+ ++
Sbjct: 211 DLLGHAGRIDEMLCEFASMKEAGILPDFISYNTLLNQLWKVGRLDLCSVYSRDMVESGIE 270
Query: 275 PDLRTYTAVIDSFGRLGHIKEALGYFGQMKRRGIHPSIHIYRSLISNSKKAEKLDLATSL 96
PDL TYTA+I SFG+ G+I+E+L F +MK + I PSI+IYRSLI++ KK K++LA +L
Sbjct: 271 PDLLTYTALIGSFGQSGNIEESLRLFNEMKTKQIRPSIYIYRSLIASLKKMGKVELAMTL 330
Query: 95 LEEMNFSVLN 66
LEEMN S+ N
Sbjct: 331 LEEMNASMSN 340