BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00031573
         (418 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   229   2e-58
ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   228   3e-58
ref|NP_178208.1| pre-mRNA-splicing factor CWC22 [Arabidopsis tha...   228   5e-58
ref|XP_002887803.1| hypothetical protein ARALYDRAFT_895889 [Arab...   228   5e-58
ref|XP_002265479.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   226   2e-57

>ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 860

 Score =  229 bits (583), Expect = 2e-58
 Identities = 109/139 (78%), Positives = 124/139 (89%), Gaps = 1/139 (0%)
 Frame = -3

Query: 416  DEEEDEKMDVHDETETERVNLRRAIYLTIMSCVNFEETGHKLLQITL-PGQEMELCIMLL 240
            DEE++E+M + DETET  VNLRR IYLTIMS V+FEE GHKLL+I L PGQEMELCIMLL
Sbjct: 586  DEEDEEEMQIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLL 645

Query: 239  ECCSQEQTYLAYYGLLGQRLCMINKIHQQNFETCFVKQYASIHQLETNKVRNVARFFAHL 60
            ECCSQE+TYL YYGLLGQR CMINK+HQ+NFE CFV+QY+ IH+LETNK+RNVA+FFAHL
Sbjct: 646  ECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHL 705

Query: 59   LTTDSLPWQVLSYIRLTEE 3
            L TD+LPW VLSYIRLTEE
Sbjct: 706  LGTDALPWHVLSYIRLTEE 724


>ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 871

 Score =  228 bits (582), Expect = 3e-58
 Identities = 109/139 (78%), Positives = 123/139 (88%), Gaps = 1/139 (0%)
 Frame = -3

Query: 416  DEEEDEKMDVHDETETERVNLRRAIYLTIMSCVNFEETGHKLLQITL-PGQEMELCIMLL 240
            DEEE+E+M + DETET  VNLRR IYLTIMS V+FEE GHKLL+I L PGQEMELCIMLL
Sbjct: 603  DEEEEEQMQIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLL 662

Query: 239  ECCSQEQTYLAYYGLLGQRLCMINKIHQQNFETCFVKQYASIHQLETNKVRNVARFFAHL 60
            ECCSQE+TYL YYGLLGQR CMINK+HQ+NFE CFV+QY+ IH+LETNK+RNV +FFAHL
Sbjct: 663  ECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVGKFFAHL 722

Query: 59   LTTDSLPWQVLSYIRLTEE 3
            L TD+LPW VLSYIRLTEE
Sbjct: 723  LGTDALPWHVLSYIRLTEE 741


>ref|NP_178208.1| pre-mRNA-splicing factor CWC22 [Arabidopsis thaliana]
            gi|6503305|gb|AAF14681.1|AC011713_29 Contains similarity
            to gb|U19615 LET 858 gene from Caenorhabditis elegans.
            ESTs gb|AI995150, gb|H76674 and gb|R84035 come from this
            gene [Arabidopsis thaliana] gi|22654971|gb|AAM98078.1|
            At1g80930/F23A5_23 [Arabidopsis thaliana]
            gi|28416525|gb|AAO42793.1| At1g80930/F23A5_23
            [Arabidopsis thaliana] gi|332198347|gb|AEE36468.1|
            pre-mRNA-splicing factor CWC22 [Arabidopsis thaliana]
          Length = 900

 Score =  228 bits (580), Expect = 5e-58
 Identities = 109/139 (78%), Positives = 124/139 (89%), Gaps = 1/139 (0%)
 Frame = -3

Query: 416  DEEEDEKMDVHDETETERVNLRRAIYLTIMSCVNFEETGHKLLQITL-PGQEMELCIMLL 240
            DEE++E+M + DETET  VNLRR IYLTIMS V+FEE GHKLL+I L PGQEMELCIMLL
Sbjct: 630  DEEDEEQMRIRDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLL 689

Query: 239  ECCSQEQTYLAYYGLLGQRLCMINKIHQQNFETCFVKQYASIHQLETNKVRNVARFFAHL 60
            ECCSQE+TYL YYGLLGQR CMINKIHQ+NFE CFV+QY+ IH+LETNK+RNVA+FFAHL
Sbjct: 690  ECCSQERTYLRYYGLLGQRFCMINKIHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHL 749

Query: 59   LTTDSLPWQVLSYIRLTEE 3
            L TD+LPW VL+YIRLTEE
Sbjct: 750  LGTDALPWHVLAYIRLTEE 768


>ref|XP_002887803.1| hypothetical protein ARALYDRAFT_895889 [Arabidopsis lyrata subsp.
            lyrata] gi|297333644|gb|EFH64062.1| hypothetical protein
            ARALYDRAFT_895889 [Arabidopsis lyrata subsp. lyrata]
          Length = 897

 Score =  228 bits (580), Expect = 5e-58
 Identities = 109/139 (78%), Positives = 124/139 (89%), Gaps = 1/139 (0%)
 Frame = -3

Query: 416  DEEEDEKMDVHDETETERVNLRRAIYLTIMSCVNFEETGHKLLQITL-PGQEMELCIMLL 240
            DEE++E+M + DETET  VNLRR IYLTIMS V+FEE GHKLL+I L PGQEMELCIMLL
Sbjct: 627  DEEDEEQMRIRDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLL 686

Query: 239  ECCSQEQTYLAYYGLLGQRLCMINKIHQQNFETCFVKQYASIHQLETNKVRNVARFFAHL 60
            ECCSQE+TYL YYGLLGQR CMINKIHQ+NFE CFV+QY+ IH+LETNK+RNVA+FFAHL
Sbjct: 687  ECCSQERTYLRYYGLLGQRFCMINKIHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHL 746

Query: 59   LTTDSLPWQVLSYIRLTEE 3
            L TD+LPW VL+YIRLTEE
Sbjct: 747  LGTDALPWHVLAYIRLTEE 765


>ref|XP_002265479.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Vitis vinifera]
          Length = 785

 Score =  226 bits (575), Expect = 2e-57
 Identities = 106/139 (76%), Positives = 124/139 (89%), Gaps = 1/139 (0%)
 Frame = -3

Query: 416 DEEEDEKMDVHDETETERVNLRRAIYLTIMSCVNFEETGHKLLQITL-PGQEMELCIMLL 240
           DEE++++M + DETET  VNLRR IYLTIMS ++FEE GHKLL+I L PGQEMELCIMLL
Sbjct: 513 DEEDEQQMKIKDETETNLVNLRRTIYLTIMSSIDFEEAGHKLLKIKLEPGQEMELCIMLL 572

Query: 239 ECCSQEQTYLAYYGLLGQRLCMINKIHQQNFETCFVKQYASIHQLETNKVRNVARFFAHL 60
           ECCSQE+TYL YYGLLGQR CMINK+HQ+NFE CFV+QY+ IH+LETNK+RNVA+FFAHL
Sbjct: 573 ECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHL 632

Query: 59  LTTDSLPWQVLSYIRLTEE 3
           L TD+LPW VL+YIRLTEE
Sbjct: 633 LGTDALPWHVLAYIRLTEE 651